miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|141651427|gb|CJ905755.1|CJ905755 AAAAGCCATGGTCACAGCATGAACAGGCAGATGAATCTACCAGCACTCCAGAAGATAATGCGGGACTTTGAGATGCAAAA
CGAGAAGATGGAAATGGTCAGCGAGGTTATGGGTGATGCCATCGACGACGCCTTGGAGGGTGATGANGAGGAGGAAGAAA
CAGAAGAGCTAGTTAGCCAGGTCCTTGACGAAATCGGCATCGACATCNACTCTGAGCTTGTCAAGGCCCCGGCTACCGCA
GTCGCCATGCCGGTTGCAGCGGGAAAGGCGCCTGTTCAAGCTGAAGCTGCGGGCGGGATGGACGGTGGAATAGACGATGA
CTTGCAGGCACGGCTTGATAACCTGAGGAAGATGTGAACATTGACGGATTGTCCACGCCCGCGCAATTCTCTGTCTGTAG
TTTCGTACCATAAATGCCACTCCGGCAAATCTCTTGACGTATCATTTGCAGTGTGTTTGGCATTGATCATCTGTATATAG
ACAGATCATCATATTTCAATAAATCACATACTCCCTCCGTCCTAAAATTCTTATCTTAGATTTGTCTAGATACGGATGTA
TCTAATACTAAAATGTGATTTGATATATCCGTATTTAGACAAATCTAAGACAAGAATTTTAGGACGGANGGAGTACTAGG
CTTGGTCTTTCTAGTTCCATTTGCCGCACTCTCGTCATGATTCTTATTTAGAT




Most similar to sp|Q9SKI2|VPS2A_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2
           homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2
          Length = 225

 Score =  103 bits (256), Expect = 1e-21
 Identities = 61/112 (54%), Positives = 64/112 (57%)
 Frame = +1

Query: 19  MNRQMNLPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXXXLVSQVLDEIG 198
           MNRQMNLP+LQKIM++FE QNEKMEMVSEVMGDAIDDAL           LVSQVLDEIG
Sbjct: 114 MNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIG 173

Query: 199 IDIXSELXXXXXXXXXXXXXXXXXXXQAEAAXXXXXXXXXXLQARLDNLRKM 354
           IDI  EL                                  LQARLDNLRKM
Sbjct: 174 IDINQELVNAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225