miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|143670034|gb|CJ917600.1|CJ917600 TAAGAATCATGACGAGAGTGCGGCAAATGGAACTAGAAAGACCAAGCCTAGATACTCCCTCCGTCCTAAAATTCTTGTCT
TAGATTTGTCTAAATACGGATATATCAAATCACATTTTAGTATTAGATACATCCGTATCTAGACAAATCTAAGATAAGAA
TTTTAGGACGGAGGGAGTATGTGATTTATTGAAATATGATGATCTGTCTATATACAGATGATCAATGCCAAACACACTGC
AAATGATACGTCAAGAGATTTGCCGGAGTGGCATTTATGGTACGAAACTACAGACAGAGAATTGCGCGGGCGTGGACAAT
CCGTCAATGTTCACATCTTCCTCAGGTTATCANGCCGTGCCTGCNAGTCATCGTCTATTCCACCGTCCATCCCGCCCGCA
GCTTCAGCTTGAACAGGCGCCTTTCCCGCTGCAACCGGCATGGCGACTGCGGTAGCCGGGGCCTTGACAAGCTCAGAGTT
GATGTCGATGCCGATTTCGTCAAGGACCTGGCTAACTAGCTCTTCTGTTTCTTCCTCCTCCTCATCACCCTCCAAGGCGT
CGTCGATGGCATCACCCATAACCTCGCTGACCATTTCCATCTTCTCGTTTTGCATCTCAAAGTCCCGCATTATCTTCTGG
AGTGCTGGTAGATTCATCTGCCTGTTCATCTGTGACATGGCTTTTGTGACGCCCTTCANGGC




Most similar to sp|Q9SKI2|VPS2A_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2
           homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2
          Length = 225

 Score =  114 bits (284), Expect = 8e-25
 Identities = 60/78 (76%), Positives = 64/78 (82%)
 Frame = -1

Query: 702 AXKGVTKAMSQMNRQMNLPALQKIMRDFEMQNEKMEMVSEVMGDAIDDALXXXXXXXXXX 523
           A KGVTKAM QMNRQMNLP+LQKIM++FE QNEKMEMVSEVMGDAIDDAL          
Sbjct: 103 AMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETE 162

Query: 522 ELVSQVLDEIGIDINSEL 469
           +LVSQVLDEIGIDIN EL
Sbjct: 163 DLVSQVLDEIGIDINQEL 180