miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|145868480|gb|ES374568.1|ES374568 CAATCTGCAGACGCATTGGCATCTTCTCTGAGGAGGAGGACGTCACTGGTAAGGCCTTCACAGGCCGTGAGTTTGATGAC
CTCAGTCCGTACGATCAGAAGAAAGCGGTCCGAAAGGCTTGCTGCTTTGCCAGAGTGGAGCCATCCCACAAGTCCAAGAT
TGTTGAATTCCTGCAGGGCTTTGATGAGATTACAGCCATGACCGGTGACGGAGTGAACGATGCTCCCGCCTTGAAGAAGG
CGGAGATTGGCATCGCCATGGGCTCTGGCACTGCCGTTGCCAAGTCTGCCTCTGAGATGGTCCTGGCTGACGACAACTTC
TCTTCTATTGTGTCTGCTGTTGAGGAGGGCAGAGCCATTTACAACAACATGAAGCAGTTTATCCGCTACCTCATCTCCTC
CAATGTTGGCGAGGTCGTCTGTATCTTCCTGACTGCTGCCTTGGGTCTGCCAGAGGCGCTGATCCCTGTCCAGCTTCTTT
GGGTCAACCTGGTGACTGATGGTCTACCAGCCACTGCTCTGGGCTTCAATCCCCCTGACTTGGACATCATGGGCAAAGCC
CCCCGCTCCCCCAAAGAGCCCCTTATCTCAGGCTGGCTCTTCTTCAGATATCTTGCCATAGGAGGTTATGTTGGTGCAGC
AACAGTGGCTGCAGCAGCTTGGTGGTTCCTGTACTGTGATGAAAGCCCAATGGTCACCTTCTACCAGCTGTCGCACTTTA
TGCAATG




Most similar to sp|P70083|AT2A1_MAKNI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P70083|AT2A1_MAKNI Sarcoplasmic/endoplasmic reticulum calcium
            ATPase 1 OS=Makaira nigricans GN=atp2a1 PE=2 SV=2
          Length = 996

 Score =  409 bits (1051), Expect = e-113
 Identities = 204/241 (84%), Positives = 213/241 (88%)
 Frame = +3

Query: 3    ICRRIGIFSEEEDVTGKAFTGREFDDLSPYDQKKAVRKACCFARVEPSHKSKIVEFLQGF 182
            ICRRIGIF E+EDV+ KA+TGREFDDL   DQ +AVR+ACCFARVEPSHKSKIVEFLQG 
Sbjct: 632  ICRRIGIFKEDEDVSNKAYTGREFDDLPSQDQAEAVRRACCFARVEPSHKSKIVEFLQGN 691

Query: 183  DEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVSAVEEGRAIY 362
            D+ITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKSASEMVLADDNFSSIV+AVEEGRAIY
Sbjct: 692  DDITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIY 751

Query: 363  NNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDL 542
            NNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDL
Sbjct: 752  NNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDL 811

Query: 543  DIMGKAPRSPKEPLISGWLFFRYLXXXXXXXXXXXXXXXWWFLYCDESPMVTFYQLSHFM 722
            DIMGK PRSPKEPLISGWLFFRY+               WWFLY    P VT+YQLSHFM
Sbjct: 812  DIMGKPPRSPKEPLISGWLFFRYMAIGGYVGAATVGGAAWWFLYDSTGPAVTYYQLSHFM 871

Query: 723  Q 725
            Q
Sbjct: 872  Q 872