miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|150876247|gb|ES906709.1|ES906709 GAACCCTATCCCCACCGACTCTCCATGGAGAACAACGACGGAGCAATGACTAACGGCGTCATAACCACCAAAGGACCTCT
TAACGCCGTCAAAAAACCACCGACCAAGGACCGACACAGCAAAGTCGACGGGAGAGGGAGGAGAATCCGCATGCCGATCA
TATGCGCCGCTCGAGTCTTCCAGCTGACAAGAGAGCTCGGCCATAAATCCGACAAGCAAACCATCGAGTGGCTCCTCCGT
CAAGCCGAGCCTTCCATCATAGCCGCCACGGGAACGGGCACAACTCCGGCGAGCTTCTCCACCGCCTCTCTCTCCGCTTC
TTCCTCCCCCTTCGCTCTCGGAAAACGCGTTTTGAGAGCGGAGGAGGAGGGAGAATCAGGCGGCCCCGGAGGAGGAGGGG
AGTTAACTGTTGGACACGCAATGAGTAGTGGTGGGTTCTGGGCGGTTCCGGCGAGGCAGGACTTCGGACAAGTATGGAGC
TTTGCCGCCGGAGCTACGCCGGAGATGTTGTTTACGCAGCAGCAGCAAGCAGCTACACTCTTTGTCCGTCAGCAGCAGCA
TGCTTCAGCGGCTGTAGCTGCGATGGGTGAGGCTTCAGCAGCTAGAGTCGGGAACTATCTGCCAGGTCATCATCTTAATC
TGCTGGCTTCTTTGTCGGGTGGGAGTCCCGGGTCGGGTCGGAGAGAAGAGGATGACTCACGCTGAAAAAGGTTTTATCAA
TCTTTTTGTGTTATTTGATTAGGGATGATTGGGTAATGTATAGAAAACTCTTTATGTTTAATGTCATGAAAGTGGTCAGA
GACTGTTCGAGTTTTTTTTTTGTGTG




Most similar to sp|Q9FTA2|TCP21_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FTA2|TCP21_ARATH Transcription factor TCP21 OS=Arabidopsis
           thaliana GN=TCP21 PE=1 SV=1
          Length = 239

 Score =  219 bits (557), Expect = 2e-56
 Identities = 130/238 (54%), Positives = 139/238 (58%), Gaps = 15/238 (6%)
 Frame = +1

Query: 25  MENNDGAMTNGVI----TTKGPLNAVKKPPTKDRHSKVDGRGRRIRMPIICAARVFQLTR 192
           M +NDGA++NG+I    + KGPLNAVKKPP+KDRHSKVDGRGRRIRMPIICAARVFQLTR
Sbjct: 1   MADNDGAVSNGIIVEQTSNKGPLNAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTR 60

Query: 193 ELGHKSDKQTIEWLLRQAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKRVLRAXXXX 372
           ELGHKSD QTIEWLLRQAE                              GKRV+RA    
Sbjct: 61  ELGHKSDGQTIEWLLRQAE-PSIIAATGTGTTPASFSTASLSTSSPFTLGKRVVRA--EE 117

Query: 373 XXXXXXXXXXLTVGHAM--------SSGGFWAVPARQDFGQVWSFAAGATPEMLFTQQQQ 528
                     LTVGH M         SGGFWAVPAR DFGQVWSFA GA PEM+F QQQQ
Sbjct: 118 GESGGGGGGGLTVGHTMGTSLMGGGGSGGFWAVPARPDFGQVWSFATGAPPEMVFAQQQQ 177

Query: 529 AATLFVR---QQQHXXXXXXXXXXXXXXRVGNYLPGHHXXXXXXXXXXXXXXXRREED 693
            ATLFVR   QQQ               RVGNYLPGHH               RRE+D
Sbjct: 178 PATLFVRHQQQQQASAAAAAAMGEASAARVGNYLPGHHLNLLASLSGGANGSGRREDD 235