miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|151521026|gb|EV379669.1|EV379669 CTCAGAGCAACACTGAGAGCATCGCCCAGTTCATCCAGAGGCTCTCCGAGACCAGCAACATCTTCACACCCGGCACAGGG
GACGCCATGGGTTTCTTTGGAGATCTACTGACCCTAGTGTGTCAGAACTTCTCCATGGTGGACCTGGTCTTGCTGCTCCA
CGGACAGAACCAGCCCCTGGGCCGCATCCAGACCCAGCTGTCTCAGTTCTTCACCCAGCATTACCTCAACGGGAGCGAGC
CCACCGACCACAATGTCGCTGCTGCTGCTGATGGTCTCATCAATGAACTTGAGGAGTACATTACCGAGAGCTTTTCTTCA
GTGGCAGTGTTGGAGGGTGTCAACGTCACTCAGACCAACCTGTCCTTCTTCAGGCGGCAGTTAACGCGTATCGCCACACA
CATACTCCGCTGCACAGACAACACATTTGGGCCGCAGCTGCTGCAGATGTGCAACCAGGGGCTGTTTGAGTGTCTGGCCC
TCAACCTGTACTGTCTGAGAGGAGAGCAGAGTGCCCTCACTTCTGTCATCAACCACCGCATAAGGACGTTGTCGACTGAC
ATGAACCCCAGCCTGGTGAACTGGCTGACCAGTATGATGACCATGAGGCTGCAGGTCATCCTGGAGCACATCCCCGTCAC
AGAGGACCAGATACTGCATTATGCCGTCCACACACAGCAGGGGGAGGCTTCTAATGCACAGGAGCCTCAACGTGCCCAGA
TCATAGAGATGGAGGACACTCACTCCCCAGCCCCGGCCACCACAGCTGAGGAAGCCATGGCGTCGTCACAGGAGACTAGG
GCAGAGCCTAGGGAAACTGGAGCCACCGGAGGGGCTGCGCCATTGGGTGGCGCCATGGCAGCAGCTGAAGCCAGCGGGAG
GGAGGAGCCTG




Most similar to sp|A3KPW9|BAG6_DANRE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|A3KPW9|BAG6_DANRE Large proline-rich protein BAG6 OS=Danio rerio
            GN=Bag6 PE=3 SV=1
          Length = 1160

 Score =  361 bits (926), Expect = 4e-99
 Identities = 176/249 (70%), Positives = 210/249 (84%), Gaps = 4/249 (1%)
 Frame = +3

Query: 3    QSNTESIAQFIQRLSETSNIFTPGTGDAMGFFGDLLTLVCQNFSMVDLVLLLHGQNQPLG 182
            Q NTESIAQFIQRLS+TSN+FTPG GDA+GFFGDLL+LVCQ+FSMVD+VLLLHG  QPL 
Sbjct: 735  QGNTESIAQFIQRLSQTSNLFTPGAGDAVGFFGDLLSLVCQSFSMVDMVLLLHGNPQPLS 794

Query: 183  RIQTQLSQFFTQHYLNGSEPTDHNVAAAADGLINELEEYITESFSSVAVLEGVNVTQTNL 362
            RIQ QL+ FFT+HYL G EPTD N+A+A++ LINELEEYI ESFS+V V EGV++ QTN+
Sbjct: 795  RIQPQLTAFFTEHYLQGREPTDANIASASEDLINELEEYIAESFSTVTVREGVDIIQTNM 854

Query: 363  SFFRRQLTRIATHILRCTDNTFGPQLLQMCNQGLFECLALNLYCLRGEQSALTSVINHRI 542
            SF R+Q TR+ATHILRCTDNTFG +LL +C QGLFECLALNLYCLRGEQ ALT+VINHRI
Sbjct: 855  SFLRQQFTRMATHILRCTDNTFGQRLLYLCTQGLFECLALNLYCLRGEQRALTTVINHRI 914

Query: 543  RTLSTDMNPSLVNWLTSMMTMRLQVILEHIPVTEDQILHYAVHTQQGEA----SNAQEPQ 710
            R +S ++NPSLVNWLTSMM+MRL VILEH PVTEDQI HY ++TQ   A    + +Q  Q
Sbjct: 915  RRMSAEVNPSLVNWLTSMMSMRLHVILEHNPVTEDQIQHYVIYTQSESARRTEAGSQSSQ 974

Query: 711  RAQIIEMED 737
            ++Q + +E+
Sbjct: 975  QSQNMNVEE 983