miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|158906856|gb|EX879577.1|EX879577 TGCGATATANTGGGGTGACTTTGCAGGTCGTCGGGGTGATGCGGTATCGCGCCGTATTGGTGGTGGTGCTGCTGCTGCTG
CTGCTGTTGCTGCGCGTGGCCGTGGCGGTGATGCGCGCCCCTGTATCCCTCATAGCCTCCTGCTTGCAACTGCTGCTGCA
CATGAGGGGGCGGAGGGTGCCCGTGGGCCGTGGCACCGATCGGAGCCTCCACCGCGTCTTCGGGCGTCAGGCTTAGCGTC
TGCGGATCGATCTGCTGCGGGTACGCGCCGCTGGACATCCAGTACAACTCCTCGAGATGGTTCTTCTGCTCCGTGGGGCT
GAAGCTCGGGGAGGACGGCACGGAGCTGCACGGGGTGCTGATTGGAGTCGAGGACACGGAGTCCTGCGGCTGGAGACGAT
TGCACTGCCGTATACTGTAGCGATCGTGCGCCGCCTAGGCCTCTTTCTTCACCTCGAATTTCATCAAATCAAAGTCATTG
ACATATTCCAACGCCAGCGGGCTGGTGGGCAGCTCTGGCCCCATGGCGAGATCGCCGCTCATTGTGTCCCTGTTCTTTAG
CAAAGTATTTACCATCGTCGCAAAACTCGACTTTTGCTTTTCTTGCCCCTCTTTGCGCATGCAATTTTCCTGGATGGGTC
TCCAAACGCAACGCGTTCAAGCGCTGGAACATGCCGGGTCACTCGAAATGTTCCACCTGGAGAAAGCGAGACCCCGTAAG
GAAAAAAAGGG




Most similar to sp|Q98UK5|MAFB_DANRE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q98UK5|MAFB_DANRE Transcription factor MafB OS=Danio rerio
           GN=mafb PE=2 SV=1
          Length = 356

 Score =  181 bits (460), Expect = 3e-45
 Identities = 103/181 (56%), Positives = 106/181 (58%), Gaps = 4/181 (2%)
 Frame = -1

Query: 542 MSGDLAMGPELPTSPLALEYVNDFDLMKFEVKKEA*AAHDRYSIRQCNRLQPQDXXXXXX 363
           MS DLAMGPELPTSPLALEYVNDFDLMKFEVKKEA AAHDR +IRQCNRLQPQ       
Sbjct: 1   MSADLAMGPELPTSPLALEYVNDFDLMKFEVKKEAMAAHDRANIRQCNRLQPQGSVSSTP 60

Query: 362 XXXXXXXXXXXXXXXXTEQKNHLEELYWMSSGAYPQQIDPQTLSLTPEDAVEXXXXXXXX 183
                           TEQKNHLEELYWM SGAYPQQIDPQTLSLTPEDAVE        
Sbjct: 61  ISTPCSSVPSSPSFSPTEQKNHLEELYWMPSGAYPQQIDPQTLSLTPEDAVEALIGATAH 120

Query: 182 XXXXXXXXXXXXQAGGYEGY----XXXXXXXXXXXXXXXXXXXXXQYGAIPHHPDDLQSH 15
                       QAG ++GY                         QYGAIPHHPDDL  H
Sbjct: 121 GHPPPPHVQQQLQAGAFDGYRGAHHHHGHAQQQQQQQPQHHHHQHQYGAIPHHPDDLSGH 180

Query: 14  P 12
           P
Sbjct: 181 P 181