miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|158923622|gb|EX896314.1|EX896314 AAGGAACAGGAGTGTTTGTGGATAGAGAAGGCGCAGGGAAACACATTGAAGCTGGAGCCAAGAAGGTTATCATTACAGCT
CCAGGCAAAGGAGACATCCCAACTTACGTTGTTGGTGTCAACGCCGATGCTTACAATCCTGATGAACCGATCATCAGCAA
TGCTTCTTGCACTACTAACTGTCTTGCTCCCTTTGTCAAAGTTCTAGACCAGAAGTTCGGTATCATAAAGGGTACAATGA
CAACTACTCACTCATACACCGGTGACCAGAGGTTACTAGACGCTAGCCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCT
TTGAACATTGTTCCCGCATCTACAGGAGCAGCTAAGGCCGTGGCTCTTGTGCTCCCTAACCTCAAAGGAAAACTCAACGG
AATAGCTCTCCGTGTGCCGACACCAAACGTGTCAGTGGTTGATCTCGTTGTGCAGGTCACCAAGAAGACTTTTGCAGAGG
AAGTTAACGCTGCTTTCAGAGACTCTGCAGAGAAAGAGCTTAAAGGTATCCTTGAAGTCTGCGATGAGCCGCTTGTGTCA
GTTGATTTCAGATGCTCGGATGTGTCGTCCACCATTGATTCTTCACTCACTATGGTGATGGGAGATGATATGG




Most similar to sp|P25856|G3PA_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P25856|G3PA_ARATH Glyceraldehyde-3-phosphate dehydrogenase A,
           chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3
          Length = 396

 Score =  360 bits (924), Expect = 4e-99
 Identities = 185/210 (88%), Positives = 189/210 (90%)
 Frame = +3

Query: 3   GTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYNPDEPIISNASCTTNC 182
           GTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAY+ DEPIISNASCTTNC
Sbjct: 158 GTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNC 217

Query: 183 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPASTGAAKAV 362
           LAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVP STGAAKAV
Sbjct: 218 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 277

Query: 363 ALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFRDSAEKELKGILEVC 542
           ALVLPNLKGKLNGIALRVPTPNVSVVDLVVQV+KKTFAEEVNAAFRDSAEKELKGIL+VC
Sbjct: 278 ALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVC 337

Query: 543 DEPLVSVDFRCSDVSSTIDSSLTMVMGDDM 632
           DEPLVSVDFRCSD S+TIDSSLTMVMGDDM
Sbjct: 338 DEPLVSVDFRCSDFSTTIDSSLTMVMGDDM 367