miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|159707346|gb|EY104765.1|EY104765 GGTCATCGTCATCATCATCATCATCATCAAACCTATTCCATCACTCTGTTTCTAGGGTTTCAGATTCTTCTTTATCCGTT
TGTCGTTGCAGTAGTAACGGTTTTCAGGAGAGTGTAAGGAGTGTGATTAAGTGGTTTGATGAGTATGTTATTGGTTATAA
AAAGTATGACATGAAAGATGATGATAATGATGATGATGAAAGTGAGGATTGGGATTGGGAAAGATGGAGTAAGCATTTTC
TGGAAGTTGATGAGCAGGAACGAATTGTTTCGGTTTTGAAGTCACATCTAGATCGAGCTATTCTGAAAGAGGATTATGAA
GATGCTGCTAGGATTAAGGTAGCAATTGCAGCAGCAGCTACTAATGACACTGTTGGTAGAGTGATGTCCTACCTGAGTAG
AGCCATAGAGGAAGAGCGATACATGGATGCAGCATTTGTACGCGATTATGCCAATGCAGGCTTGGTGGGATGGTGGGCCG
GACTTTCGGATGATAACAAAGACCCATATGGTCGCATCATCCATATAAGTGCAGAGCATGGAAGATACCTGGCAAGAAGT
TACAGTCCCAGGCAGCTTGCCACTGCTTCAGATGGTGCCCCTGTGTTTGAAGTTTTTCTTACGATGAATGAGAATGGAGA
ATACAATCATCAGGCTGTATACCTGAAACGGCCCCATGTTCCGCGACATTTTCCAGCTGTTTCTTCCAAGTCATCAAGTC
TCACTAGCAGCATTTCACCGCCCGACACAGTGGGCGACAAAGGTGATCTGTTTGTCAGGACATAGAAGATACAGATGATG
ACAAAGACATGGATGATGATTCTGATATGGCT




Most similar to sp|Q93YW0|EXEC1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q93YW0|EXEC1_ARATH Protein EXECUTER 1, chloroplastic
           OS=Arabidopsis thaliana GN=EX1 PE=1 SV=1
          Length = 684

 Score =  187 bits (474), Expect = 1e-46
 Identities = 93/184 (50%), Positives = 123/184 (66%)
 Frame = +3

Query: 231 KHFLEVDEQERIVSVLKSHLDRAILKEDYEDXXXXXXXXXXXXTNDTVGRVMSYLSRAIE 410
           KHF +VD+Q+R++SVLKS L+RAI +EDYED            TND VG+VMS   RA+ 
Sbjct: 118 KHFDQVDDQDRLLSVLKSQLNRAIKREDYEDAARLKVAIAATATNDAVGKVMSTFYRALL 177

Query: 411 EERYMDAAFVRDYANAGLVGWWAGLSDDNKDPYGRIIHISAEHGRYLARSYSPRQLATAS 590
           EERY DA ++RD A AGLVGWW+G+S+D KDP+G I+ I+AEHGRY+ARSY+PRQL+T++
Sbjct: 178 EERYKDAVYLRDKAGAGLVGWWSGISEDVKDPFGLIVQITAEHGRYVARSYNPRQLSTSA 237

Query: 591 DGAPVFEVFLTMNENGEYNHQAVYLKRPHVPRHFPAVXXXXXXXXXXXXPPDTVGDKGDL 770
            GAP+FE+FLT++  G Y  QAVYLK   +    P +             P    D G+L
Sbjct: 238 AGAPLFEIFLTLDGKGNYKKQAVYLKWKEIFPDVPTMPSRTLTPGRFLTSPGRKEDTGNL 297

Query: 771 FVRT 782
            V +
Sbjct: 298 AVES 301