miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|160499907|gb|EY272985.1|EY272985 GCTCAGGAANNGTTTCGCGATAGTTCGTCCTCCGGGTCACCACGCCGAGCCCAACCAGGCGATGGGCTTCTGCTTTTTCA
ACAACGTGGCAATCGCCGCCCGCATCTTGCACACGCGGCTCGGCCTCCAAAGGATACTCATAGTGGACTGGGACGTCCAT
CACGGTAACGGCACGCAGCAGATCTTCTACGAGGACCCTCACGTGCTGTATATCTCCCTCCACCGACACGACGACGGCAA
CTTCTTCCCGGGCACGGGTGCGGCCAGCGAGTGCGGCGCCGGGCCCGGGCTGGGGTACACCGTGAACGTGGCCTGGCCCG
GGTCACCGCCCCTGGCCGATGCGGAGTACTTGGCCGCCTTCCGCACCGTCGTGATGCCCATCGCCAAGGAGTACGACCCC
GAACTGGTGCTCGTGTCGTGCGGCTTCGAT




Most similar to sp|Q80ZH1|HDAC5_CRIGR

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q80ZH1|HDAC5_CRIGR Histone deacetylase 5 OS=Cricetulus griseus
            GN=HDAC5 PE=2 SV=1
          Length = 1111

 Score =  221 bits (563), Expect = 1e-57
 Identities = 99/145 (68%), Positives = 119/145 (82%), Gaps = 2/145 (1%)
 Frame = +2

Query: 2    LRXXFAIVRPPGHHAEPNQAMGFCFFNNVAIAARILHTRLGLQRILIVDWDVHHGNGTQQ 181
            L+  FAI+RPPGHHAE + AMGFCFFN+VAI A++L  +L + ++LIVDWD+HHGNGTQQ
Sbjct: 809  LKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKLNVGKVLIVDWDIHHGNGTQQ 868

Query: 182  IFYEDPHVLYISLHRHDDGNFFPGTGAASECGAGPGLGYTVNVAWPG--SPPLADAEYLA 355
             FY+DP VLYISLHR+D+GNFFPG+GA  E G GPG+GY VNVAW G   PP+ D EYL 
Sbjct: 869  AFYDDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGMGYNVNVAWTGGVDPPIGDVEYLT 928

Query: 356  AFRTVVMPIAKEYDPELVLVSCGFD 430
            AFRTVVMPIA E+ P++VLVS GFD
Sbjct: 929  AFRTVVMPIAHEFSPDVVLVSAGFD 953