miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|161464270|gb|EX577866.1|EX577866 GGAGACCCTCAGGCTGTATCCTCCAGCTCTCTTCATCAACAGGACAGACACTAGGGACGTGAAGCTGGGCAAACTCGACA
TCCCTGCCGGCACGCAGCTCAATCTGCCTATTATTGACCTGCACCATGATGTCGACATATGGGGAGCTAATGCGGAGGAG
TTTGATCCGTCGAGGTTTGCAGATGGCAAGAGCCATCACCTTGGTGCATACTTCCCCTTTGGGATTGGCCCTGCCATCTG
TGTTGGGCAGAATCTCGCGATTGTTGAGGCAAAGATGGCGCTTGCAATGCTCCTCCAGCGGTTTGCGTTTGATGTCTCGC
CGTCCTATGTTCATGCGCCCATGATGGCGATGACCCTCCATCCCCAGTATGGTGCTCAACTTCTTGTCCACAAGATCTGA
GCCTTGTGTGGTGCCTGACTTATATGGAATTAGGAGGCGTGACAGCAAGGTACTCCCTCCGTCTCAAAATAAGTGTCTCA
ACCTTAATATAACTTTGTATTAAAGCTGATAAAAAATTAAGACACTTATTTTAGGACGGAGAAAGTATATGTGAACGCGA
TGTCTCCGTGTCTCCTGCATCCGTGTGGATTTTGAGCGATTTGTAATAAGAGGTTGCTAACTTGTCTGAAGT




Most similar to sp|Q05047|C72A1_CATRO

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q05047|C72A1_CATRO Secologanin synthase OS=Catharanthus roseus
           GN=CYP72A1 PE=2 SV=1
          Length = 524

 Score =  143 bits (361), Expect = 8e-34
 Identities = 66/135 (48%), Positives = 92/135 (68%), Gaps = 3/135 (2%)
 Frame = +2

Query: 2   ETLRLYPPALFINRTDTRDVKLGKLDIPAGTQLNLPIIDLHHDVDIWGANAEEFDPSRFA 181
           E LRLYPP + + +   +D KLG   IPAGTQ+ LP + LH +  IWG +A EF+P RF 
Sbjct: 388 EVLRLYPPVIDLTKIVHKDTKLGSYTIPAGTQVMLPTVMLHREKSIWGEDAMEFNPMRFV 447

Query: 182 DGKSHHLG---AYFPFGIGPAICVGQNLAIVEAKMALAMLLQRFAFDVSPSYVHAPMMAM 352
           DG ++       Y PF  GP +C+GQN A+++AK+ LAM+LQRF FDV+PSYVHAP   +
Sbjct: 448 DGVANATKNNVTYLPFSWGPRVCLGQNFALLQAKLGLAMILQRFKFDVAPSYVHAPFTIL 507

Query: 353 TLHPQYGAQLLVHKI 397
           T+ PQ+G+ ++  K+
Sbjct: 508 TVQPQFGSHVIYKKL 522