miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|161526464|gb|EY900283.1|EY900283 GGAAAGACAAAACCTTTCACACACCAAACAAACGATGTCGTCTCTCTCTCGCCTTCTCCTCCGTGGCACCAACAGCTTCA
GCGCCCCCACGAACGGCCGCTTTTTCTCCGCCGCTACCGCTGCTGCAGCCGCAACCTCGCAACGAACACCGTCCCTAATC
ACCCTCGTGAACGACGAACAAGATCCTAAATACATCACGGAGAAGTTCAAAAAGGCCTCCGAAACGGAGTGGTTCCGGAA
GAACATTGCCGTCTATGAGAGAACCGTCCGCCGCCTCGCCGCCGCCAAGAAGTTCGAGTGGATCGAGGAGATCCTTGAGG
AGCAGAACAAGTACCATAACATGTCCAAGGAAGGATTCGTGGCGAGGATTATAAACCTCTACGGACGAGCTGGTATGTTC
GAGAATGCACAGAAGGTGTTCGACGGAATGCCTGAGAGAAACTGCAAGAGATCAGTGTTGTCTTTCAACGCCTTGCTGAA
TGCGTGTGTGAACTCCAAGAAGTTCGATTTGGTTGAAGGTATCTTCAAGGAGTTGCCAGGTAAACTCTCGATCCAACCAG
ATATTGCATCTTACAATACTCTGATCAAGGGATTGTGCGGAAAGGGTTCCTTGTCGGAAGCCATTGCGTTGGTTGATGAG
ATTGAGAACAAGGGTCTGAAACCTGATCATTTCACGTACAACTTGCTTTTACATGAGACGTATACAAAAGGCACTTTGAG
CAGGAGAGAGATATGGGGTAGAATGGTGGAGAGACGTTCGAGGGACATACGTAGTACAATGCTCGGTGC




Most similar to sp|Q9LK57|PP226_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat_field-containing protein
           At3g13160, mitochondrial OS=Arabidopsis thaliana
           GN=At3g13160 PE=1 SV=1
          Length = 394

 Score =  393 bits (1009), Expect = e-109
 Identities = 199/249 (79%), Positives = 213/249 (85%), Gaps = 2/249 (0%)
 Frame = +2

Query: 35  MSSLSRLLLRGTNSFSAPTNGRFFSXXXXXXXXXSQRTPSLITLVNDEQDPKYITEKFKK 214
           MSSLSR LLRG  SFS  TN RFFS         S   PSLITLVNDE+DPK+ITEKFKK
Sbjct: 1   MSSLSRFLLRGNFSFSTHTNRRFFSAVTAAAATPSPPKPSLITLVNDERDPKFITEKFKK 60

Query: 215 ASETEWFRKNIAVYERTVRRLAAAKKFEWIEEILEEQNKYHNMSKEGFVARIINLYGRAG 394
           A + EWFRKNIAVYERTVRRLAAAKKFEW+EEILEEQNKY NMSKEGFVARIINLYGR G
Sbjct: 61  ACQAEWFRKNIAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVG 120

Query: 395 MFENAQKVFDGMPERNCKRSVLSFNALLNACVNSKKFDLVEGIFKELPGKLSIQPDIASY 574
           MFENAQKVFD MPERNCKR+ LSFNALLNACVNSKKFDLVEGIFKELPGKLSI+PD+ASY
Sbjct: 121 MFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASY 180

Query: 575 NTLIKGLCGKGSLSEAIALVDEIENKGLKPDHFTYNLLLHETYTKGTLSRRE-IWGRMVE 751
           NTLIKGLCGKGS +EA+AL+DEIENKGLKPDH T+N+LLHE+YTKG     E IW RMVE
Sbjct: 181 NTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVE 240

Query: 752 RR-SRDIRS 775
           +   RDIRS
Sbjct: 241 KNVKRDIRS 249