miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|161536320|gb|EY908343.1|EY908343 GCATCAACGACACTGGCGGTGTCAAGCAGGCTTCACATCTCCTCAAATACGACTCCACTCTCGGTATCTTTGACGCTGAT
GTGAAACCTTCCGGAGACGCTGCTCTCTCTGTTGATGGAAAGATCATCAAGATTGTGTCTAACCGCAACCCGTCTCTTCT
CCCCTGGAAGGAGTTGGGAATAGACATTGTCATTGAAGGAACAGGAGTGTTTGTGGATAGAGAAGGTGCAGGGAAACACA
TTGAAGCTGGAGCCAAGAAAGTTATCATTACAGCTCCAGGGAAAGGAGGCATCCCAACTTACGTTGTTGGTGTCAACGCC
GATGCTTACAATCCTGATGAACCGATCATCAGCAATGCTTCTTGCACTACTAACTGTCTTGCTCCCTTTGTCAAAGTTCT
AGACCAGAAGTTCGGTATCATAAAGGGTACAATGACAACTACTCACTCATACACCGGTGACCAGAGGTTACTAGACGCTA
GCCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCCACATCTACAGGAGCAGCTAAAGCCGTGGCT
CTTGTGCTCCCTAACCTCAAAGGAAAACTCAACG




Most similar to sp|P25856|G3PA_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P25856|G3PA_ARATH Glyceraldehyde-3-phosphate dehydrogenase A,
           chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3
          Length = 396

 Score =  338 bits (866), Expect = 2e-92
 Identities = 171/197 (86%), Positives = 176/197 (89%)
 Frame = +3

Query: 3   INDTGGVKQASHLLKYDSTLGIFDADVKPSGDAALSVDGKIIKIVSNRNPSLLPWKELGI 182
           INDTGGVKQASHLLKYDSTLGIFDADVKPSG+ A+SVDGKII++VSNRNPSLLPWKELGI
Sbjct: 93  INDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGI 152

Query: 183 DIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGGIPTYVVGVNADAYNPDEPIISNAS 362
           DIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKG IPTYVVGVNADAY+ DEPIISNAS
Sbjct: 153 DIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNAS 212

Query: 363 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTG 542
           CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTSTG
Sbjct: 213 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTG 272

Query: 543 AAKAVALVLPNLKGKLN 593
           AAKAVALVLPNLKGKLN
Sbjct: 273 AAKAVALVLPNLKGKLN 289