miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|163957411|gb|FC856723.1|FC856723 CAGCGTTGTCATTATTTACATTATAAACCTTGTCGACAGTTTCAAACCTATTAAGAGATGGCCTCATCAGTTGTACGCCG
CTTTGACATGGGAAGCCCCTCCTTACACTAATGCACATCTTCTTAAAGATGAAAACACGTACTGGAACTCTGTGTTTAAT
TTGACTGCCACCTATCGAGTAGACGCAGATATCTTTGTGCCTTATGGAGATATTCAGTTTAAACAGATTCCTGTTGAAAA
AAGACCGAATTACTTCGAAATAGCCAGAAATAAGACAAAGTCTGTCGCTTGGTTCGTTTCTAACTGTAACACACCATCAA
GAAGAGATAAATATTTGGAACAGATGAAGAAAATTATTGATGTCGACATTTTTGGAAAATGTGGAAAACCTTGTCCTACA
GGCGACTTCCTGTGCTCCCCAGATATCCCTGTACAGTACAGGTTTTATTTATCGTTTGAGAACTCTTTTTGTAAAGATTA
CATTACGGAGAAATTCTTCAAATTGTATACTCAAAATACACTCATCGTGCCAGTAGTTAGAGGTGGATTCGATTACAATA
AATATCTTCCAAACAACACTTTTATAAATACTGCAGGCTTCAGAAGCGCAAGAGACTTAGCTTTATATTTAAAGCAGCTA
AGTGACGATCCGGTGGCTTACAGTAAATATTTAGAAAACAAGCATATGTACGACTTTC




Most similar to sp|P83088|FUCTC_DROME

>>sp|P37116|NCPR_VIGRR NADPH--cytochrome P450 reductase OS=Vigna
           radiata var. radiata PE=1 SV=1
          Length = 690

 Score =  157 bits (397), Expect(2) = 6e-38
 Identities = 86/165 (52%), Positives = 102/165 (61%), Gaps = 1/165 (0%)
 Frame = +2

Query: 236 KPVATPLRPPPVKXXXXXXXXXGRKRVTIFFGTQTGTAEGFAKSMADEARVRYEKAVFKV 415
           KPV  P R   ++         G+ +VTIFFGTQTGTAEGFAK++A+E + RYEKA  KV
Sbjct: 57  KPVVVP-RDLMMEEEEEVDVAAGKTKVTIFFGTQTGTAEGFAKALAEEIKARYEKAAVKV 115

Query: 416 VXXXXXXXXXXXXXXXXXXXTVALFFLATYGDGEPTDNAARFYNGFTEGK-EKEVWLKDL 592
           V                   ++  F LATYGDGEP DNAARFY  FTEGK E+ +WL+ L
Sbjct: 116 VDLDDYAADDDLYEEKLKKESLVFFMLATYGDGEPIDNAARFYKWFTEGKDERGIWLQKL 175

Query: 593 KYGIFGLGNRQYEHFK*VAKVVDELLEEQGGDTSWFLLAXGDDDQ 727
            YG+FGLGNRQYEHF  + KVVDE L EQG       +  GDDDQ
Sbjct: 176 TYGVFGLGNRQYEHFNKIGKVVDEELAEQGA-KRLVAVGLGDDDQ 219



 Score = 21.6 bits (44), Expect(2) = 6e-38
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 729 AIEDDFTAW 755
           +IEDDF+AW
Sbjct: 220 SIEDDFSAW 228


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P83088|FUCTC_DROME Alpha-(1,3)-fucosyltransferase C
           OS=Drosophila melanogaster GN=FucTC PE=2 SV=3
          Length = 424

 Score =  146 bits (368), Expect = 1e-34
 Identities = 86/225 (38%), Positives = 122/225 (54%), Gaps = 17/225 (7%)
 Frame = +2

Query: 47  PIKRWPHQLYAALTWEAPPYTNAHLLKDENTYWNSVFNLTATYRVDADIFVPYG---DIQ 217
           P +R PHQ+Y     E P  T    L DE  +    +NLT TYR+D+D+F PYG   DI 
Sbjct: 155 PSQRSPHQVYVFALMEPPGETKR--LDDEQGF----YNLTMTYRIDSDVFWPYGQLLDIT 208

Query: 218 FKQI-------PVEKRPNYF------EIARNKTKSVAWFVSNCNTPSRRDKYLEQMKKII 358
              +       P  K P  F      ++   KTK+ AWFVS+C T S+R+    ++++  
Sbjct: 209 ADAVVAPSVKPPWRKPPVAFNDSLVWDLWSGKTKTAAWFVSHCETLSKREVLANRLQEFF 268

Query: 359 DVDIFGKCGK-PCPTGDFLCSPDIPVQYRFYLSFENSFCKDYITEKFFKLYTQNTLIVPV 535
           +VDI+G CG   C  GD  C+  +   Y FYL+FENS C DY+TEK F    +   ++PV
Sbjct: 269 EVDIYGNCGTLSCTRGDPHCAEMLDTDYFFYLAFENSLCDDYVTEKLFDALERT--VIPV 326

Query: 536 VRGGFDYNKYLPNNTFINTAGFRSARDLALYLKQLSDDPVAYSKY 670
           V GG DY++ LP +++++   F S   LA Y+K +  DP  Y  Y
Sbjct: 327 VFGGADYSRILPPHSYVDANRFMSVEGLAQYMKLVVADPDLYVSY 371