miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|166137136|gb|FD568552.1|FD568552 GATCTTTGACGCTGATGTGAAACCTTCCGGAGACGCTGCTCTCTCTGTTGATGGAAAGATCATCAAGGTTGTGTCTAACC
GCAACCCTTCTCTTCTCCCCTGGAAGGAGTTGGGAATAGACATTGTCATTGAAGGAACAGGAGTGTTTGTGGATAGAGAA
GGCGCAGGGAAACACATTGAAGCTGGAGCCAAGAAGGTTATCATTACAGCTCCAGGCAAAGGAGACATCCCAACTTACGT
TGTTGGTGTCAACGCCGATGCTTACAATCCTGATGAACCGATCATCAGCAATGCTTCTTGCACTACTAACTGTCTTGCTC
CCTTTGTCAAAGTTCTAGACCAGAAGTTCGGTATCATAAAGGGTACCATGACAACTACTCACTCATACACCGGTGACCAG
AGGTTACTAGACGCTAGCCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCCACATCTACAGGAGC
AGCTAAGGCCGTGGCTCTTGTGCTCCCTAACCTCAAAGGAAAACTCAACGGAATAGCTCTCCGTGTGCCGACACCAAACG
TGTCAGTGGTTGATCTCGTTGTGCACGTCACCAAGAAGACTTTTGCAGAGGAAGTTAACGCTGCTTTCAGAGACTCTGCA
GAGAAAGAGCTTAAAGGTATCCTTGAAGTCTGCGATGA




Most similar to sp|P25856|G3PA_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P25856|G3PA_ARATH Glyceraldehyde-3-phosphate dehydrogenase A,
           chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3
          Length = 396

 Score =  387 bits (994), Expect = e-107
 Identities = 198/225 (88%), Positives = 204/225 (90%)
 Frame = +2

Query: 2   IFDADVKPSGDAALSVDGKIIKVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIE 181
           IFDADVKPSG+ A+SVDGKII+VVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIE
Sbjct: 114 IFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIE 173

Query: 182 AGAKKVIITAPGKGDIPTYVVGVNADAYNPDEPIISNASCTTNCLAPFVKVLDQKFGIIK 361
           AGAKKVIITAPGKGDIPTYVVGVNADAY+ DEPIISNASCTTNCLAPFVKVLDQKFGIIK
Sbjct: 174 AGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIK 233

Query: 362 GTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVALVLPNLKGKLNGIAL 541
           GTMTTTHSYTGDQ                  NIVPTSTGAAKAVALVLPNLKGKLNGIAL
Sbjct: 234 GTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIAL 293

Query: 542 RVPTPNVSVVDLVVHVTKKTFAEEVNAAFRDSAEKELKGILEVCD 676
           RVPTPNVSVVDLVV V+KKTFAEEVNAAFRDSAEKELKGIL+VCD
Sbjct: 294 RVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCD 338