miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|167112474|gb|FD835033.1|FD835033 CCGGACCCAAACCCTGAGCGATGTCTGGAAGGCCATCTTGACTCAGGACGTCAACTGGAATGCGCTGGAGCTCAAGCAGC
TGTCCCCCAGCGCCGTGGACCTGCTCAAGAGGTTGCTGCAGCGGGATCCCGCCCAACGGCCATCAGCATTCGTGGCTCTG
GAGCACCCCTGGCTGTCGGAAGATGGCCGGGCGAGGGACCTGCCGCTGCAAGGCAGCGTTGTGCAGCGCCTGCAGCGCTT
CTCGACCTTTGGCCACCTGAAGCAGCTGGTGCTGAAGATGATTGTTGACGAGATTCAAGATGAAGGCAAGCAGGGCAAGG
CGCCTGCCAGCCGCAAGGCGCGCGCTGCTCTAGGGAACCTGCAGGACCTCTTCAACGAGCTCGACACGGACAGCAGCGGT
GCAATAACGCTTGAGGAACTGTCAGCCGGGCTTCGGCGCCAGGGTTACGTCCTGGCTGACAATGAGATTGAGAACCTGAT
GCGGCGGGTGGATTTCGACCACAACGGCACCGTGGACCTGTCAGAGTTCATCACCACGTTGATGGATTGGGATCAGGTGC
AGGCGGAGCAAGGTTGGCAGGTATATTTGGATCACGCATTCCGCAAGATGGATCACGACGGAGATGGCTACATCTCCTTG
GACGAGCTCCTCCAGCAGCTGCCCCCGCTGCGGCCCGCGCCAGGTGTTGGCTCTCTGGCGCAGGTGGTTTCGGACGCAGC
GGCTGCACTGGGCTTCAGCCGCGGGTACGA




Most similar to sp|Q9FMP5|CDPKH_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FMP5|CDPKH_ARATH Calcium-dependent protein kinase 17
           OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1
          Length = 528

 Score =  144 bits (364), Expect = 5e-34
 Identities = 78/208 (37%), Positives = 121/208 (58%)
 Frame = +2

Query: 23  VWKAILTQDVNWNALELKQLSPSAVDLLKRLLQRDPAQRPSAFVALEHPWLSEDGRARDL 202
           ++ AIL   V++++     +SP A DL+K++L  DP QR +A   L HPW+ EDG A D+
Sbjct: 281 IFNAILRGHVDFSSDPWPSISPQAKDLVKKMLNSDPKQRLTAAQVLNHPWIKEDGEAPDV 340

Query: 203 PLQGSVVQRLQRFSTFGHLKQLVLKMIVDEIQDEGKQGKAPASRKARAALGNLQDLFNEL 382
           PL  +V+ RL++F    + K++ L++I   + +E   G              L+++F  +
Sbjct: 341 PLDNAVMSRLKQFKAMNNFKKVALRVIAGCLSEEEIMG--------------LKEMFKGM 386

Query: 383 DTDSSGAITLEELSAGLRRQGYVLADNEIENLMRRVDFDHNGTVDLSEFITTLMDWDQVQ 562
           DTDSSG ITLEEL  GL +QG  L++ E++ LM   D D NGT+D  EFI   M  +++ 
Sbjct: 387 DTDSSGTITLEELRQGLAKQGTRLSEYEVQQLMEAADADGNGTIDYGEFIAATMHINRLD 446

Query: 563 AEQGWQVYLDHAFRKMDHDGDGYISLDE 646
            E+    +L  AF+  D D  GYI+++E
Sbjct: 447 REE----HLYSAFQHFDKDNSGYITMEE 470