miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|167434692|gb|FD939144.1|FD939144 GGAAAAGGTCTCATATATATAAACCCCATGGAGCACTTCTGTGTCTCAATATTCTTTGTTTTTCGTTAGCTCTCTCTCTT
TCTCTTTGTTCCATACTCTCTGTTTGTGGCAAAGGCGTAAATCACTAGTGAAACAGAGAGATGGACTTTGACGAGGAGCT
TAATCTCTGTACCACCAAAGGTAAAAATATAGACACTTCTTCTGGAGAAGCATCTTCAACAACTAGGATATGTCCCGGTT
AACCAACAACACGACCAGAAGCAAATGATATCGTTTAGTCCTCAACAGCCGCAACAGCAGTATATGTTCAAGTACTGGAG
CGACACGTTGAATCTAAGTCCAAGAGGAAGGAGAATGATGATGATGAACCAAGAAAGTATTGTTCAGCCGTACAGCGCAA
CCAAGCTTTACAGAGGAGTGAGACAACGTCAATGGGGGAAGTGGGTCGCAGAGATACGCAAGCCGAAGAGCAGATCACGT
CTCTGGCTTGGTACTTTTGATACAGCCGAAGAAGCTGCCATGGCCTATGACCGTCAAGCTTTTAAATT




Most similar to sp|Q9M0J3|ERF54_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9M0J3|ERF54_ARATH Ethylene-responsive transcription factor
           ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1
          Length = 292

 Score =  182 bits (462), Expect(2) = 3e-53
 Identities = 97/124 (78%), Positives = 104/124 (83%), Gaps = 9/124 (7%)
 Frame = +1

Query: 202 LEKHLQQLG-YVPVNQQHD------QKQMISFSPQQPQQQ--YMFKYWSDTLNLSPRGRR 354
           L+   QQLG YVPV +Q        QKQMISFSPQQ QQQ  YM +YWSDTLNLSPRGR 
Sbjct: 66  LQNQQQQLGSYVPVLEQRQDPTMQGQKQMISFSPQQQQQQQQYMAQYWSDTLNLSPRGRM 125

Query: 355 MMMMNQESIVQPYSATKLYRGVRQRQWGKWVAEIRKPKSRSRLWLGTFDTAEEAAMAYDR 534
           MMMM+QE+ VQPY ATKLYRGVRQRQWGKWVAEIRKP+SR+RLWLGTFDTAEEAAMAYDR
Sbjct: 126 MMMMSQEA-VQPYIATKLYRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTAEEAAMAYDR 184

Query: 535 QAFK 546
           QAFK
Sbjct: 185 QAFK 188



 Score = 47.0 bits (110), Expect(2) = 3e-53
 Identities = 23/29 (79%), Positives = 25/29 (86%), Gaps = 1/29 (3%)
 Frame = +3

Query: 141 MDFDEELNLCTTKGKNIDTS-SGEASSTT 224
           MDFDEELNLC TKGKN+D S  GEASST+
Sbjct: 1   MDFDEELNLCITKGKNVDHSFGGEASSTS 29


>sp|Q9SKT1|ERF53_ARATH Ethylene-responsive transcription factor
           ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1
          Length = 336

 Score =  144 bits (364), Expect = 3e-34
 Identities = 76/116 (65%), Positives = 86/116 (74%), Gaps = 19/116 (16%)
 Frame = +1

Query: 256 QKQMISFSPQQP----------QQQYMFKYWSDTLNLSPRGRRMMM--MNQESI------ 381
           Q+QMISF PQQ           QQQ++ +YW D L LSP GR MMM  + QES       
Sbjct: 117 QQQMISFDPQQQVQPYVAQQQQQQQHLLQYWRDILKLSPSGRMMMMNMLRQESDLPLTRP 176

Query: 382 -VQPYSATKLYRGVRQRQWGKWVAEIRKPKSRSRLWLGTFDTAEEAAMAYDRQAFK 546
            VQP+SATKLYRGVRQR WGKWVAEIRKP++R+RLWLGTFDTAEEAAMAYDR+AFK
Sbjct: 177 PVQPFSATKLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFK 232