miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|167485170|gb|FD971922.1|FD971922 GGGTCACAGCGACCAACTTCTGTCCTCCCAACAACGCACTGCCTAATAACGCAGGTGGTTGGTGTAACCCTCCGCTTCAC
CACTTTGATCTCTCTCAGCCTATCTTCCAACGCATTGCTCATTACAAAGCTGGTGTTGTCCCTGTTTCTTACCGAAGGGT
TCCGTGTAAGAGAAGGGGAGGTATAAGATTCACCATCAACGGCCACTCTTACTTCAACCTTGTCTTGGTCACTAATGTCG
GCGGCGCCGGAGATGTTCGGTCTGTGGCGGTTAAAGGTTCAAGAACAAACTGGCAGCCAATGTCTAGGAACTGGGGGCAA
AACTGGCAAAGTAACAATCTGCTCAATGGTCAAGCATTGGCCTTTAAGGTTACTGCTAGTGATGGTCAAACTGTCGTCTC
CAACAATGTTGCTCCGGCTAGCTGGTCCTTTGGACAAACCTTCTCCGGCCGTCAGTTCCGTTAAAATTGTGTCAGAAGTT
TCGGTTTTATGTAGTTTAGGGTTTGTGTTGTGTCAAGGACAGAGGAGAGAGAGTTGGAGAGGGAGAGGGTTTAAGGCTCT
GTTAGGGTTTTAATTGGAGAGTCATTAAGCTTCTTCTTTCAACTCTTGAGGGTAAAATGGTGAAAAGGGCTTATTTTAAT
AGGGCTCTTTTAGTCATTTTTAAGA




Most similar to sp|O80622|EXP15_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O80622|EXP15_ARATH Expansin-A15 OS=Arabidopsis thaliana
           GN=EXPA15 PE=2 SV=2
          Length = 253

 Score =  284 bits (726), Expect = 4e-76
 Identities = 133/153 (86%), Positives = 138/153 (90%)
 Frame = +3

Query: 3   VTATNFCXXXXXXXXXXGGWCNPPLHHFDLSQPIFQRIAHYKAGVVPVSYRRVPCKRRGG 182
           VTATNFC          GGWCNPPLHHFDLSQP+FQRIA YKAGVVPVSYRRVPC RRGG
Sbjct: 101 VTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGG 160

Query: 183 IRFTINGHSYFNLVLVTNVGGAGDVRSVAVKGSRTNWQPMSRNWGQNWQSNNLLNGQALA 362
           IRFTINGHSYFNLVLVTNVGGAGDV SVAVKGSRT WQ MSRNWGQNWQSNNLLNGQAL+
Sbjct: 161 IRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALS 220

Query: 363 FKVTASDGQTVVSNNVAPASWSFGQTFSGRQFR 461
           FKVTASDG+TVVSNN+APASWSFGQTF+GRQFR
Sbjct: 221 FKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253