miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|167490187|gb|FD971375.1|FD971375 AGGGAGATCATCAAGATTGTGTCTAACCGCAACCCGTCTCTTCTCCCCTGGAAGGAGTTGGGAATAGACATTGTCATTGG
GAACAGGAGTGTTTGTGGATAGAGAAGGTGCAGGGAAACACATTGAAGCTGGAGCCAAGAAAGTTATCATTACAGCTCCA
GGGAAAGGAGACATCCCAACTTACGTTGTTGGTGTCAACGCCGATGCTTACAATCCTGATGAACCGATCATCAGCAATGC
TTCTTGCACTACTAACTGTCTTGCTCCCTTTGTCAAAGTTCTAGACCAGAAGTTCGGTATCATAAAGGGTACAATGACAA
CTACTCACTCATACACCGGTGACCAGAGGTTACTAGACGCTAGCCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTG
AACATTGTTCCCACATCTACAGGAGCAGCTAAAGCCGTGGCTCTTGTGCTCCCTAACCTCAAAGGAAAACTCAACGGAAT
AGCTCTCCGTGTACCGACACCAAACGTGTCAGTGGTTGATCTCGTTGTGCAGGTCACCAAGAAGACTTTTGCAGAGGAAG
TTAACGCTGCTTTCAGAGACTCTGCAGAGAAAGAGCTTAAAGGTATCCTCGAAGTCTGCGATGAGCCGCTTGTGTCAGTT
GATTTCAGATGCTCGGATGTGTCGTCCACCATTGATTCTTCGCTCACTATGGTGATGGGAGATGATATGGTTAGTGATAG
CT




Most similar to sp|P25856|G3PA_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P25856|G3PA_ARATH Glyceraldehyde-3-phosphate dehydrogenase A,
           chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3
          Length = 396

 Score =  363 bits (933), Expect(2) = e-108
 Identities = 187/211 (88%), Positives = 191/211 (90%)
 Frame = +2

Query: 80  GTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYNPDEPIISNASCTTNC 259
           GTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAY+ DEPIISNASCTTNC
Sbjct: 158 GTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNC 217

Query: 260 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAV 439
           LAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTSTGAAKAV
Sbjct: 218 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 277

Query: 440 ALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFRDSAEKELKGILEVC 619
           ALVLPNLKGKLNGIALRVPTPNVSVVDLVVQV+KKTFAEEVNAAFRDSAEKELKGIL+VC
Sbjct: 278 ALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVC 337

Query: 620 DEPLVSVDFRCSDVSSTIDSSLTMVMGDDMV 712
           DEPLVSVDFRCSD S+TIDSSLTMVMGDDMV
Sbjct: 338 DEPLVSVDFRCSDFSTTIDSSLTMVMGDDMV 368



 Score = 50.1 bits (118), Expect(2) = e-108
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = +1

Query: 4   EIIKIVSNRNPSLLPWKELGIDIVIGNRSV 93
           +II++VSNRNPSLLPWKELGIDIVI    V
Sbjct: 132 KIIQVVSNRNPSLLPWKELGIDIVIEGTGV 161


>sp|P09315|G3PA_MAIZE Glyceraldehyde-3-phosphate dehydrogenase A,
           chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1
          Length = 403

 Score =  352 bits (904), Expect(2) = e-103
 Identities = 180/211 (85%), Positives = 186/211 (88%)
 Frame = +2

Query: 80  GTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYNPDEPIISNASCTTNC 259
           GTGVFVDREGAGKHI+AGAKKV+ITAPGKGDIPTYVVGVNAD YNPDEPIISNASCTTNC
Sbjct: 165 GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADQYNPDEPIISNASCTTNC 224

Query: 260 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAV 439
           LAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTSTGAAKAV
Sbjct: 225 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 284

Query: 440 ALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFRDSAEKELKGILEVC 619
           +LVLPNLKGKLNGIALRVPTPNVSVVDLVVQV+KKT AEEVN AFRD+A  EL GILEVC
Sbjct: 285 SLVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAEEVNQAFRDAAANELTGILEVC 344

Query: 620 DEPLVSVDFRCSDVSSTIDSSLTMVMGDDMV 712
           D PLVSVDFRCSDVSSTID+SLTMVMGDDMV
Sbjct: 345 DVPLVSVDFRCSDVSSTIDASLTMVMGDDMV 375



 Score = 43.1 bits (100), Expect(2) = e-103
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +1

Query: 4   EIIKIVSNRNPSLLPWKELGIDIVIGNRSV 93
           ++IK+VS+RNPS LPW ELGID+VI    V
Sbjct: 139 KVIKVVSDRNPSNLPWGELGIDLVIEGTGV 168


>sp|P12858|G3PA_PEA Glyceraldehyde-3-phosphate dehydrogenase A,
           chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2
          Length = 405

 Score =  341 bits (874), Expect(2) = e-100
 Identities = 175/211 (82%), Positives = 183/211 (86%)
 Frame = +2

Query: 80  GTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYNPDEPIISNASCTTNC 259
           GTGVFVDREGAG+HI AGAKKV+ITAPGKGDIPTYVVGVNADAY   + IISNASCTTNC
Sbjct: 167 GTGVFVDREGAGRHITAGAKKVLITAPGKGDIPTYVVGVNADAYTHADDIISNASCTTNC 226

Query: 260 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAV 439
           LAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTSTGAAKAV
Sbjct: 227 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 286

Query: 440 ALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFRDSAEKELKGILEVC 619
           ALVLP LKGKLNGIALRVPTPNVSVVDLVVQV+KKTFAEEVN AFR+SA KEL GIL VC
Sbjct: 287 ALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNEAFRESAAKELTGILSVC 346

Query: 620 DEPLVSVDFRCSDVSSTIDSSLTMVMGDDMV 712
           DEPLVSVDFRC+DVSST+DSSLTMVMGDD+V
Sbjct: 347 DEPLVSVDFRCTDVSSTVDSSLTMVMGDDLV 377



 Score = 44.7 bits (104), Expect(2) = e-100
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = +1

Query: 4   EIIKIVSNRNPSLLPWKELGIDIVIGNRSV 93
           ++IK+VS+RNP+ LPWKELGID+VI    V
Sbjct: 141 KVIKVVSDRNPANLPWKELGIDLVIEGTGV 170


>sp|P19866|G3PA_SPIOL Glyceraldehyde-3-phosphate dehydrogenase A,
           chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2
          Length = 401

 Score =  343 bits (880), Expect(2) = 8e-99
 Identities = 174/211 (82%), Positives = 185/211 (87%)
 Frame = +2

Query: 80  GTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYNPDEPIISNASCTTNC 259
           GTGVFVDR+GAGKH++AGAKKV+ITAPGKGDIPTYVVGVN + Y   + IISNASCTTNC
Sbjct: 163 GTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNC 222

Query: 260 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAV 439
           LAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTSTGAAKAV
Sbjct: 223 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAV 282

Query: 440 ALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFRDSAEKELKGILEVC 619
           ALVLPNLKGKLNGIALRVPTPNVSVVDLVVQV+KKTFAEEVNAAFR+SA+ ELKGIL VC
Sbjct: 283 ALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 342

Query: 620 DEPLVSVDFRCSDVSSTIDSSLTMVMGDDMV 712
           DEPLVS+DFRC+DVSSTIDSSLTMVMGDDMV
Sbjct: 343 DEPLVSIDFRCTDVSSTIDSSLTMVMGDDMV 373



 Score = 38.9 bits (89), Expect(2) = 8e-99
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +1

Query: 4   EIIKIVSNRNPSLLPWKELGIDIVIGNRSV 93
           ++IK+VS+RNP  LPW ++GID+VI    V
Sbjct: 137 KVIKVVSDRNPVNLPWGDMGIDLVIEGTGV 166


>sp|P09043|G3PA_TOBAC Glyceraldehyde-3-phosphate dehydrogenase A,
           chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA
           PE=2 SV=1
          Length = 392

 Score =  338 bits (868), Expect(2) = 3e-97
 Identities = 172/211 (81%), Positives = 183/211 (86%)
 Frame = +2

Query: 80  GTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYNPDEPIISNASCTTNC 259
           GTGVFVDREGAGKHI+AGAKKV+ITAPGKGDIPTYVVGVNAD YNPDEPIISNASCTTNC
Sbjct: 154 GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADLYNPDEPIISNASCTTNC 213

Query: 260 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAV 439
           LAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTSTGAAKAV
Sbjct: 214 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 273

Query: 440 ALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFRDSAEKELKGILEVC 619
           AL    L+G    + LRVPTPNVSVVDLVVQV+KKTFAEEVNAAFR++A+KELKGIL+VC
Sbjct: 274 ALSSQALRGSSMALPLRVPTPNVSVVDLVVQVSKKTFAEEVNAAFREAADKELKGILDVC 333

Query: 620 DEPLVSVDFRCSDVSSTIDSSLTMVMGDDMV 712
           DEPLVSVDFRCSDVSST+D+SLTMVMGDDMV
Sbjct: 334 DEPLVSVDFRCSDVSSTVDASLTMVMGDDMV 364



 Score = 38.1 bits (87), Expect(2) = 3e-97
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +1

Query: 4   EIIKIVSNRNPSLLPWKELGIDIVIGNRSV 93
           ++I++VS+RNP  LPW +LGID+VI    V
Sbjct: 128 KVIQVVSDRNPVNLPWGDLGIDLVIEGTGV 157


>sp|P09672|G3PA_SINAL Glyceraldehyde-3-phosphate dehydrogenase A,
           chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2
           SV=1
          Length = 233

 Score =  342 bits (878), Expect = 1e-93
 Identities = 175/205 (85%), Positives = 184/205 (89%)
 Frame = +2

Query: 98  DREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYNPDEPIISNASCTTNCLAPFVK 277
           DREGAGKHI+AGAKKV+ITAPGKGDIPTYVVGVNA+ Y+ ++ IISNASCTTNCLAPFVK
Sbjct: 1   DREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAELYSHEDTIISNASCTTNCLAPFVK 60

Query: 278 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVALVLPN 457
           VLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTSTGAAKAVALVLPN
Sbjct: 61  VLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPN 120

Query: 458 LKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFRDSAEKELKGILEVCDEPLVS 637
           LKGKLNGIALRVPTPNVSVVDLVVQV+KKTFAEEVNAAFRD+AEKELKGIL+VCDEPLVS
Sbjct: 121 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDEPLVS 180

Query: 638 VDFRCSDVSSTIDSSLTMVMGDDMV 712
           VDFRCSDVSSTIDSSLTMVMGDDMV
Sbjct: 181 VDFRCSDVSSTIDSSLTMVMGDDMV 205