miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|168512523|gb|DC635430.1|DC635430 ATATTAGTCTAATGGGAGACCAGGCTCTGAGAGACCCTTGCGATCCCAGGACACTGATGTGGGGTAACTAACACCCACTG
GAAGTCTACGCTGAGTTCACAGGCTATAGACTCAGAGGTTCCAGTTGAGATCAAGTTGGGAGACACACCCTTGTTCATTC
TCCTTGAGAAGCAGCCATTATCAACAGAACATTGATAGAACCTGTGTTTGGGGAAAGGCCTGATGGCTTTGAGTCTAGGT
TGGAAAGCAACCAGGAATGGCTGTGGTCTCCTCTTGCAGGCTATGCGAAGCGGTGGTGTTCTCTTGTTTCCCTGTGGCCG
GTGTCCCTGGAGGGGAGCTGGAAGCTTTTTGGATCCTGAGATAAAGGCTTTCCTGGAGGAGAACACTGAAGTCACCAGCA
GTGGTAGCCTCACCCCTGAAATCCAGTTGCGGCTTTTGACCCCCAGATGCAAATTCTGGTGGGAGAGAGCTGACCTGTGG
CCCCACAGTGATCCTTACTGGGCAATCTACTGGCCAACATGGCAAAACCCTGTCTCTAATAAAAAAATATAAAAATTAGC
TGGATGTGGTTAGCACATGCCTGTAGTCCCAGCAACTTGGGAGACAGAGGCTGGAGAATCGCTTGAGCTTGGGACATGGA
GATTACAGTGAGCTGAGATCACACCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCATCTCTAAATAAATAAATAA
ATATTAAAATGAAAAAAGTATTTGGTTAATTTATTTAAGATACAGGGTCTCGCTATGTTGCCAGGCTGGACTCCAACTCT
TGGGTTCAAGAGATCCTCCTGCCTCGGCCTCCCTGAGTGGCTGGGACTACAGGCATGCATCACTGTACCCTATTAAAATA
GTTATTTTTACTACATTTTATACTCATTTATGCTGCTACTCAGAAGGATTGATGTAGCTACTGTAACTGCACTGTAACAG
TGATAACTGTTAACCACTTGTCACTGGGAAGGCGAAACAATCTGATTAAGCTCTATATTGATAGTACAGTTATTATGCCA
GGCGGTGTCAGCTGATCAGCCTGGGAGCCAAACGCGATCCAGTCCGAAGGACATCTGGTAC




Most similar to sp|Q8IXQ9|MET20_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FI78|HCT_ARATH Hydroxycinnamoyl-Coenzyme A shikimate/quinate
           hydroxycinnamoyltransferase OS=Arabidopsis thaliana
           GN=HCT PE=2 SV=1
          Length = 433

 Score =  205 bits (521), Expect(2) = 9e-58
 Identities = 98/141 (69%), Positives = 118/141 (83%), Gaps = 1/141 (0%)
 Frame = +1

Query: 166 LPEGYFGNVICTASPLAEAGKV-TRGLADGAAVIQEALDRMNDSYCRSALDYLELQPDLS 342
           LP GYFGNVI TA+PLA AG + ++     A  I + L RM+D+Y RSALDYLE+QPDLS
Sbjct: 293 LPPGYFGNVIFTATPLAVAGDLLSKPTWYAAGQIHDFLVRMDDNYLRSALDYLEMQPDLS 352

Query: 343 ALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANKDGSL 522
           ALVRGAHT++CPNLG+TSWVRLPI+DADFGWGRP+FMGPGGI YEGL+FVLPS   DGSL
Sbjct: 353 ALVRGAHTYKCPNLGITSWVRLPIYDADFGWGRPIFMGPGGIPYEGLSFVLPSPTNDGSL 412

Query: 523 SIAISLQAEHMEKFRKLIFEV 585
           S+AI+LQ+EHM+ F K +FE+
Sbjct: 413 SVAIALQSEHMKLFEKFLFEI 433



 Score = 39.7 bits (91), Expect(2) = 9e-58
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +2

Query: 44  TYAVLAAQVWRCVSLARGLPSEQPTKLY 127
           +Y +LA  VWR V  ARGLP++Q TKLY
Sbjct: 253 SYEMLAGHVWRSVGKARGLPNDQETKLY 280


>sp|Q8GSM7|HCT_TOBAC Hydroxycinnamoyl-Coenzyme A shikimate/quinate
           hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT
           PE=1 SV=1
          Length = 435

 Score =  203 bits (516), Expect(2) = 6e-56
 Identities = 95/140 (67%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
 Frame = +1

Query: 166 LPEGYFGNVICTASPLAEAGKV-TRGLADGAAVIQEALDRMNDSYCRSALDYLELQPDLS 342
           LP GYFGNVI T +P+A AG + ++ +   A+ + +AL RM++ Y RSALDYLELQPDL 
Sbjct: 295 LPPGYFGNVIFTTTPIAVAGDIQSKPIWYAASKLHDALARMDNDYLRSALDYLELQPDLK 354

Query: 343 ALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANKDGSL 522
           ALVRGAHTF+CPNLG+TSW RLPIHDADFGWGRP+FMGPGGIAYEGL+F+LPS   DGS 
Sbjct: 355 ALVRGAHTFKCPNLGITSWSRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSQ 414

Query: 523 SIAISLQAEHMEKFRKLIFE 582
           S+AISLQAEHM+ F K +++
Sbjct: 415 SVAISLQAEHMKLFEKFLYD 434



 Score = 35.4 bits (80), Expect(2) = 6e-56
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 44  TYAVLAAQVWRCVSLARGLPSEQPTKLY 127
           +Y +LA  VWR   +ARGL  +Q TKLY
Sbjct: 255 SYEMLAGHVWRSTCMARGLAHDQETKLY 282


>sp|O23917|HCBT2_DIACA Anthranilate N-benzoyltransferase protein 2
           OS=Dianthus caryophyllus GN=HCBT2 PE=1 SV=1
          Length = 446

 Score =  112 bits (279), Expect(2) = 9e-28
 Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 2/141 (1%)
 Frame = +1

Query: 166 LPEGYFGNVICTASPLAEAGKVT-RGLADGAAVIQEALDRMNDSYCRSALDYLELQPDLS 342
           LP+GY GNV+  A   A  G ++   L D A  +QEAL  ++D Y RSA+D+ E +PDL 
Sbjct: 305 LPKGYCGNVVFLAVCTATVGDLSCNPLTDTAGKVQEALKGLDDDYLRSAIDHTESKPDLP 364

Query: 343 ALVRGA-HTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANKDGS 519
               G+      PN+ + SW R+P    DFGWG P F G   I Y+G  F++PS N DGS
Sbjct: 365 VPYMGSPEKTLYPNVLVNSWGRIPYQAMDFGWGSPTFFGISNIFYDGQCFLIPSQNGDGS 424

Query: 520 LSIAISLQAEHMEKFRKLIFE 582
           +++AI+L + H+  F+K  ++
Sbjct: 425 MTLAINLFSSHLSLFKKYFYD 445



 Score = 32.3 bits (72), Expect(2) = 9e-28
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 44  TYAVLAAQVWRCVSLARGLPSEQPTKL 124
           TY V+A  VWR VS ARGL   +  KL
Sbjct: 264 TYEVVAGHVWRSVSKARGLSDHEEIKL 290


>sp|O23918|HCBT3_DIACA Anthranilate N-benzoyltransferase protein 3
           OS=Dianthus caryophyllus GN=HCBT3 PE=1 SV=1
          Length = 445

 Score =  111 bits (277), Expect(2) = 1e-27
 Identities = 58/141 (41%), Positives = 83/141 (58%), Gaps = 2/141 (1%)
 Frame = +1

Query: 166 LPEGYFGNVICTASPLAEAGKVT-RGLADGAAVIQEALDRMNDSYCRSALDYLELQPDLS 342
           LP+GY GNV+  A   A  G +    L D A  +QEAL  ++D Y RSA+D+ E +PDL 
Sbjct: 304 LPKGYCGNVVFLAVCTATVGDLACNPLTDTAGKVQEALKGLDDDYLRSAIDHTESKPDLP 363

Query: 343 ALVRGA-HTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANKDGS 519
               G+      PN+ + SW R+P    DFGWG P F G   I Y+G  F++PS N DGS
Sbjct: 364 VPYMGSPEKTLYPNVLVNSWGRIPYQAMDFGWGNPTFFGISNIFYDGQCFLIPSQNGDGS 423

Query: 520 LSIAISLQAEHMEKFRKLIFE 582
           +++AI+L + H+  F+K  ++
Sbjct: 424 MTLAINLFSSHLSLFKKHFYD 444



 Score = 32.3 bits (72), Expect(2) = 1e-27
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 44  TYAVLAAQVWRCVSLARGLPSEQPTKL 124
           TY V+A  VWR VS ARGL   +  KL
Sbjct: 263 TYEVVAGHVWRSVSKARGLSDHEEIKL 289


>sp|O24645|HCBT1_DIACA Anthranilate N-benzoyltransferase protein 1
           OS=Dianthus caryophyllus GN=HCBT1 PE=1 SV=1
          Length = 445

 Score =  108 bits (271), Expect(2) = 2e-27
 Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 2/141 (1%)
 Frame = +1

Query: 166 LPEGYFGNVICTASPLAEAGKVT-RGLADGAAVIQEALDRMNDSYCRSALDYLELQPDLS 342
           LP+GY GNV+  A   A  G ++   L D A  +QEAL  ++D Y RSA+D+ E +P L 
Sbjct: 304 LPKGYCGNVVFLAVCTATVGDLSCNPLTDTAGKVQEALKGLDDDYLRSAIDHTESKPGLP 363

Query: 343 ALVRGA-HTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANKDGS 519
               G+      PN+ + SW R+P    DFGWG P F G   I Y+G  F++PS + DGS
Sbjct: 364 VPYMGSPEKTLYPNVLVNSWGRIPYQAMDFGWGSPTFFGISNIFYDGQCFLIPSRDGDGS 423

Query: 520 LSIAISLQAEHMEKFRKLIFE 582
           +++AI+L + H+ +F+K  ++
Sbjct: 424 MTLAINLFSSHLSRFKKYFYD 444



 Score = 33.9 bits (76), Expect(2) = 2e-27
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +2

Query: 44  TYAVLAAQVWRCVSLARGLPSEQPTKL 124
           TY V+AA VWR VS ARGL   +  KL
Sbjct: 263 TYEVVAAHVWRSVSKARGLSDHEEIKL 289


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8IXQ9|MET20_HUMAN Methyltransferase-like protein 20 OS=Homo
           sapiens GN=METTL20 PE=2 SV=1
          Length = 262

 Score =  207 bits (527), Expect = 1e-52
 Identities = 101/127 (79%), Positives = 106/127 (83%), Gaps = 11/127 (8%)
 Frame = +1

Query: 223 MALSLGWKATRNGCGLLLQAMRSGGVLLFPCGRCPWRGAGSFLDPEIKAFLEENTEVTSS 402
           MALSLGWKA RN CGLLLQA+RS G+LLFPCG+CPWRGAGSFLDPEIKAFLEENTEVTSS
Sbjct: 1   MALSLGWKAHRNHCGLLLQALRSSGLLLFPCGQCPWRGAGSFLDPEIKAFLEENTEVTSS 60

Query: 403 GSLTPEIQLRLLTPRCKFWWERADLWPHSDPYWAIYWPTWQ--------NP--VSNKKI* 552
           GSLTPEIQLRLLTPRCKFWWERADLWPHSDPYWAIYWP  Q        NP  V  K + 
Sbjct: 61  GSLTPEIQLRLLTPRCKFWWERADLWPHSDPYWAIYWPGGQALSRYLLDNPDVVRGKSVL 120

Query: 553 KL-AGCG 570
            L +GCG
Sbjct: 121 DLGSGCG 127