miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|171512559|gb|FE153544.1|FE153544 AGGGAGTCTTGAGGTAGTTGTCGTGGAGAGCAGACGTACGCGTCGTGCTCTGGATTCTTTGTTGGATTAAAAAAGAGAAA
ACCCTATAAAATCCGCAGCTATGGGGGTCTGTTGTTATACTTTCCTGAAGTATATGGTCATAGTCTTCAACCTGCTTTAT
ATGCTGTTGGGCGGCGCTCTGCTGGGCACGTCGCTATGGATGCACTTGGACGGGGCGAACATGGCACCGGTCACCGCGGA
CCTCGACGGCTATAACTACGTGCTGTACTTCCTGATGGCCGTGGGCGCTGTCATGTTCATCATGGGCTTCCTCGGATGCT
GCGGCGCCTTCCAGGAGTCGCAGTGCATGCTGGCCACGTTCTTCGCCCTGGTCCTGGTCCTGTTCGCCGGTCAGATCGCC
GCTGGAGTGTGGCTCAAGACGAACGAAGAGCGATTCACGGACTTGGCGAAGAGTTCCCTGGCCAAGTCCATCCAGCACGA
CTACGGCATCAATAAGCTCAAGACACAGGCCTTCGATGTCATCCAGTCCGAGCTGAAGTGTTGCGGATCAGAGGGCCCCA
CTGACTGGGCTGAGAGTCGCTTCAACGGCGCTGACGAGCGTGGAGTACTGGACATCGGCATCAGAGGAGCCATCGGGGCC
TACAAAGTGCCTGAATCTTGCTGCAACGAGAAGGACAAGACACTGTGCGAAGCTACCCGCAGCTTGTCCATCGGGGCACA
GATCACGGGCTCGATCTACACTGAGGGTTGTGCCAAGAAGATGATCCAGCTGATCCACAGCCACAGCTACGAGGTCCTGG
GTGTGGTGGCTGCCATCGTCCTGATCGAAATCCTGGCCATGATATTCTCGATG




Most similar to sp|Q4R7W6|TSN1_MACFA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q4R7W6|TSN1_MACFA Tetraspanin-1 OS=Macaca fascicularis GN=TSPAN1
           PE=2 SV=1
          Length = 240

 Score =  103 bits (256), Expect = 2e-21
 Identities = 75/254 (29%), Positives = 115/254 (45%), Gaps = 7/254 (2%)
 Frame = +2

Query: 113 CYTFLKYMVIVFNXXXXXXXXXXXXTSLWMHLDGANM----APVTADLDGYNYVLYFLMA 280
           C++F+K ++I+FN              +W+ +DGA+      P+++    +  V YFL+A
Sbjct: 3   CFSFIKTIMILFNLLIFLCGAALLAVGIWVSIDGASFLKIFGPLSSSAMQFVNVGYFLIA 62

Query: 281 VGAVMFIMGFLGCCGAFQESQCMXXXXXXXXXXXXXGQIAAGV---WLKTNEERFTDLAK 451
            GAV+F +GFLGC GA  ES+C               ++AA V      T  E F  L  
Sbjct: 63  AGAVVFALGFLGCYGAQTESKCALMTFFFILLLIFIAEVAAAVVALVYTTMAEHFLTLL- 121

Query: 452 SSLAKSIQHDYGINKLKTQAFDVIQSELKCCGSEGPTDWAESRFNGADERGVLDIGIRGA 631
             +  +I+ DYG  K  TQ ++   +ELKCCG    TD+ +S +   +            
Sbjct: 122 --VVPAIKKDYGSQKDFTQVWNTTMTELKCCGFTNYTDFEDSPYVRENN----------- 168

Query: 632 IGAYKVPESCCNEKDKTLCEATRSLSIGAQITGSIYTEGCAKKMIQLIHSHSYEVLGVVA 811
                 P  CCN    T+ E         Q       EGC ++++  I +++  V GV A
Sbjct: 169 ----AFPPFCCNNVTNTVNETCTKEKADNQ-----KVEGCFQQLLYDIRTNAVTVGGVAA 219

Query: 812 AIVLIEILAMIFSM 853
            I  +E+ AMI SM
Sbjct: 220 GIGGLELAAMIVSM 233