miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|171555838|gb|FE149907.1|FE149907 AGTCTTGAGGTAGTTGTCGTGGAGAGCAGACGTACGCGCCGTGCTCTGGATTCTTTGTTGGATTAAAAAAGAGAAAACCC
TATAAAATCCGCAGCTATGGGGGTCTGTTGTTATACTTTCCTGAAGTATATGGTCATAGTCTTCAACCTGCTTTATATGC
TGTTGGACGGCGCTCTGCTGAGCACGTCGCTATGGATGCACTTGGACGGGGCGAACATGGCACCGGTCACCGCGGACCTC
GACGGCTATAACTACGTGCTGTACTTCCTGATGGCCGTGGGCGCTGTCATGTTCATCATGGGCTTCCTCGGATGCTGCGG
CGCCTTCCAGGAGTCGCAGTGCATGCTGGCCACGTTCTTCGCCCTGGTCCTGGTCCTGTTCGCCGGTCAGATCGCCGCTG
GAGTGTGGCTCAAGACGAACGAAGAGCGATTCACGGACTTGGCGAAGAGTTCCCTGGCCAAGTCCATCCAGCACGACTAC
GGCATCAATAAGCTCAAGACACAGGCCTTCGATGTCATCCAGTCCGAGCTGAAGTGTTGCGGATCAGAGGGCCCCACTGA
CTGGGCTGAGAGTCGCTTCAACGGCGCTGACGAGCGTGGAGTACTGGACATCGGCATCAGAGGAGCCATCGGGGCCTACA
AAGTGCCTGAATCTTGCTGCAACGAGAAGGACAAGACACTGTGCGAAGCTACCCGCAGCTTGTCCATCGGGGCACAGATC
ACGGGCTCGATCTACACTGAGGGTTGTGCCAAGAAGATGATCCAGCTGATTCCACAGCCACAG




Most similar to sp|Q4R7W6|TSN1_MACFA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q4R7W6|TSN1_MACFA Tetraspanin-1 OS=Macaca fascicularis GN=TSPAN1
           PE=2 SV=1
          Length = 240

 Score =  100 bits (250), Expect = 9e-21
 Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 7/225 (3%)
 Frame = +1

Query: 109 CYTFLKYMVIVFNLLYMLLDGALLSTSLWMHLDGANM----APVTADLDGYNYVLYFLMA 276
           C++F+K ++I+FNLL  L   ALL+  +W+ +DGA+      P+++    +  V YFL+A
Sbjct: 3   CFSFIKTIMILFNLLIFLCGAALLAVGIWVSIDGASFLKIFGPLSSSAMQFVNVGYFLIA 62

Query: 277 VGAVMFIMGFLGCCGAFQESQCMXXXXXXXXXXXXXGQIAAGV---WLKTNEERFTDLAK 447
            GAV+F +GFLGC GA  ES+C               ++AA V      T  E F  L  
Sbjct: 63  AGAVVFALGFLGCYGAQTESKCALMTFFFILLLIFIAEVAAAVVALVYTTMAEHFLTLL- 121

Query: 448 SSLAKSIQHDYGINKLKTQAFDVIQSELKCCGSEGPTDWAESRFNGADERGVLDIGIRGA 627
             +  +I+ DYG  K  TQ ++   +ELKCCG    TD+ +S +   +            
Sbjct: 122 --VVPAIKKDYGSQKDFTQVWNTTMTELKCCGFTNYTDFEDSPYVRENN----------- 168

Query: 628 IGAYKVPESCCNEKDKTLCEATRSLSIGAQITGSIYTEGCAKKMI 762
                 P  CCN    T+ E         Q       EGC ++++
Sbjct: 169 ----AFPPFCCNNVTNTVNETCTKEKADNQ-----KVEGCFQQLL 204