miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|18213603|gb|AV917826.1|AV917826 CAACTGATGNNCTCCCTTCATTACCAAATTAAGTGACCCAAATTTAGAACTAAGTTAGTACAAATATAGTACTAAAGCAA
CGGCACTTATTTTGGGACGGAGGGAATATAAACCGAACCAATGTGTTGCCTGTAGCTGATATACATACTAGAGCTAGGTA
GCTCAACATAAGGTGTACTCGCAATCAAGCAAACGAGTGAGGATCTCCTGGCAGCTTGGGCGCTTCTCCGGTTCTGTCCA
GCAATCTGCTATCAAGCTACCCAGAGGTCCATCTGGTATTTCCAATCTTGCCCCTTCGTTCGCAACAGAGTAAACAACCT
GAACTGGCGGCTTTCCTGCCCAGGGCCTACTCAGAGTGCAAAGCTCCCACATGATAACTCCTAGGCTGAAGATATCACAC
TTTTCTGTAAATGGTTCGTTACGAATAAGCTCAGGAGCCATCCACTCTGGAGTGCCTGCAGATGAGTTGTCACTCATTGC
AGAATTCGACAATAACCGAGAGAGCCCAAAATCACATAACTTGACTGTCCAGTGCTTGTTAACAAGGCAATTCGCACTCT
TTAGATCACGATGAACTATCTTCAAACGGTGCATACACATAAGACCCCTACAGATATCACGGGAGCATTTTTAGCCTCCT
TCGCCAACTGATCTTACTTTTCTGGCCACTTGTGTGAATCAAAT




Most similar to sp|Q05609|CTR1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q05609|CTR1_ARATH Serine/threonine-protein kinase CTR1
            OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
          Length = 821

 Score =  150 bits (379), Expect(2) = 2e-36
 Identities = 77/149 (51%), Positives = 103/149 (69%), Gaps = 6/149 (4%)
 Frame = -1

Query: 618  DICRGLMCMHRLK--IVHRDLKSANCLVNKHWTVKLCDFGLSRLLSNSAMSDNSSAGTPE 445
            D+ +G+  +H     IVHRDLKS N LV+K +TVK+CDFGLSRL +++ +S  S+AGTPE
Sbjct: 657  DVAKGMNYLHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPE 716

Query: 444  WMAPELIRNEPFTEKCDIFSLGVIMWELCTLSRPWAGKPPVQVVYSVANEGARLEIP--- 274
            WMAPE++R+EP  EK D++S GVI+WEL TL +PW    P QVV +V  +  RLEIP   
Sbjct: 717  WMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNL 776

Query: 273  DGPLGSLIADCWT-EPEKRPSCQEILTRL 190
            +  + ++I  CWT EP KRPS   I+  L
Sbjct: 777  NPQVAAIIEGCWTNEPWKRPSFATIMDLL 805



 Score = 23.1 bits (48), Expect(2) = 2e-36
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 682 LIHTSGQKSKISWRRRLKM 626
           L+H SG + ++  RRRL M
Sbjct: 636 LLHKSGAREQLDERRRLSM 654


>sp|Q54TA1|DRKC_DICDI Probable serine/threonine-protein kinase drkC
            OS=Dictyostelium discoideum GN=drkC PE=3 SV=1
          Length = 749

 Score =  125 bits (314), Expect = 3e-28
 Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 11/154 (7%)
 Frame = -1

Query: 618  DICRGLMCMHRLK--IVHRDLKSANCLVNKHWTVKLCDFGLS-----RLLSNSAMSDNSS 460
            DI +G+  +H     ++HRDLKS N LV++H+ VK+ DFGLS      L   +AM+    
Sbjct: 596  DIAKGMNYLHCCDPIVIHRDLKSHNLLVDEHYRVKISDFGLSTRFKKHLDKKTAMTP--- 652

Query: 459  AGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLSRPWAGKPPVQVVYSVANEGARLE 280
             GTP W APE++RN+P+TEK D+FS  +++WE+ T   P+ G P  Q+V SV     R  
Sbjct: 653  VGTPCWTAPEVLRNDPYTEKADVFSFAIVLWEIVTREDPYQGMPTFQIVISVGQHKLRPI 712

Query: 279  IP---DGPLGSLIADCWTE-PEKRPSCQEILTRL 190
            +P     P   LI +CW+E P++RPS QEI+ RL
Sbjct: 713  VPPQVSAPFTRLITECWSEDPQQRPSFQEIVKRL 746