miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|183021198|gb|EW511484.2|EW511484 CGGTGCGCGCCTCTTCGGAATCGGCACGAGGGTCATCACCACCGCCACCTATTGGGCCAACCTGTGGAAGGCATGCGTTA
CCGACTCCACGGGCGTCTCCAATTGCAAGGATTTCCCCTCCATGCTGGCGCTGGACGGTTATATCCAGGCATGTCGAGGA
CTTATGATTGCCGCTGTCAGCCTGGGCTTTTTTGGTTCCATATTTGCCCTGTTTGGAATGAAATGTACCAAGGTCGGAGG
CTCAGATAAAGCCAAAGCTAAAATGGCTTGTTTGGCTGGGATTGTATTCATACTGTCAGGGCTGTGCTCAATGACCGGGT
GTTCCCTGTATGCAAACAAAATCACAACGGAATTCTTTGATCCCCACTACGTGGAGCAGAAGTATGAATTAGGAGCTGCT
CTGTTTATTGGATGGGCAGGAGCCTCACTCTGCATAATTGGTGGTGTCATATTTTGCTTTTCAATATCTGACAACAACAA
AAAACCCAGAATGGGATACACATACAATGGGGCCACATCTGTCATGTCTTCTCGGACAAAGTATCACGGAGGAGGAGGAG
GAGATCTGAAAACCACAAACCCTTCCAAACAGTTTGACAAAAATGCTTACGTCTAAGAAGAGCACTGCCGCAAGCTGT




Most similar to sp|Q5E9L0|CLD10_BOVIN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5E9L0|CLD10_BOVIN Claudin-10 OS=Bos taurus GN=CLDN10 PE=2 SV=1
          Length = 231

 Score =  374 bits (959), Expect = e-103
 Identities = 183/194 (94%), Positives = 186/194 (95%)
 Frame = +2

Query: 32  VITTATYWANLWKACVTDSTGVSNCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFAL 211
           VITTATYWANLWK CVTDSTGVSNCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFAL
Sbjct: 39  VITTATYWANLWKTCVTDSTGVSNCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFAL 98

Query: 212 FGMKCTKVGGSDKAKAKMACLAGIVFILSGLCSMTGCSLYANKITTEFFDPHYVEQKYEL 391
            GMKCTKVGGSDKAKAK+ACLAGIVFILSGLCSMTGCSLYANKITTEFFDP +VEQKYEL
Sbjct: 99  IGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGCSLYANKITTEFFDPLFVEQKYEL 158

Query: 392 GAALFIGWAGASLCIIGGVIFCFSISDNNKKPRMGYTYNGATSVMSSRTKYHGGGGGDLK 571
           GAALFIGWAGASLC+IGGVIFCFSISDNNK PRMGYTYNGATSVMSSRTKYH G  GDLK
Sbjct: 159 GAALFIGWAGASLCLIGGVIFCFSISDNNKAPRMGYTYNGATSVMSSRTKYH-GREGDLK 217

Query: 572 TTNPSKQFDKNAYV 613
           T NPSKQFDKNAYV
Sbjct: 218 TPNPSKQFDKNAYV 231