miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|187377622|gb|DK042360.1|DK042360 GATTCAGCTGGAAGAAGTTATTGCTGCTTCTAAAGACTCCCAGTCAGCTCACAAACTTGAAAAATCAGAATTGCTAACAA
GTTGAAGGACAGAATATGTATGAAAATGATCCAAGCATTAACAATGTGTCATGTTTGCACAGTAACATCTACAATTGATA
ATAATGAACAATATCCATAAATGCAGCTGAATTCTTAAAAATATATACAAATTCCATTGAGTTAAATCTTTGGAGAGAAA
ACAGACCCACCCACATCTCACATTGACTTATTGATAAACTGAAATATTCCTTCTCAGTCTTCAGCTGACACCAGCGGCCG
AGTCTTAGTAACTGAACCAAGCGGGTCTCTTCCTGGGTCTCTCCACTATCCTCTTGTCTTTATCCTGGTTGCTTGGCGTT
TCCCCCTCATACAGGACCACAGTCTCCACGGTTGGGGCCCTCAGCGGGCCGCCTTCCATCGCATTTATCTGTTGACGAAT
CAGAGCCGTCTCTCTGCTCACTTTAGCGTAGCAGAACCCACACAGGGTGTGCTTCTGCTTCAGGTGGCCGCACTCCAGAC
ACGGCTCGATGTTGTTCTTCACTTTAATAAGTTTGCTTTCAGATCTCCTCCTGGTGCGGTTGACCTCTATGGTGCGCCTC
TTCTTTGGTGCTGCCATCCAGAGGATGCTGTCCAGGAGGCCAGTGGGCTGCTCCTGGCTCTCCTGCTGCTCTTCCAGCTG
GTTCTCCGGGTGGAGCTGAGGAGGGAGGCTGGGGCCGTCCACTGCCAGCGCTGGGGCCAGGTTGGTTTCGAGTCCACTCG
CCTGCAATAATCTGCTTTCAATCCGTANC




Most similar to sp|Q2TBI6|RM32_BOVIN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q2TBI6|RM32_BOVIN 39S ribosomal protein L32, mitochondrial
           OS=Bos taurus GN=MRPL32 PE=2 SV=1
          Length = 188

 Score =  161 bits (407), Expect = 6e-39
 Identities = 83/148 (56%), Positives = 98/148 (66%)
 Frame = -2

Query: 774 PALAVDGPSLPPQLHPXXXXXXXXXXXXQPTGLLDSILWMAAPKKXXXXXXXXXXXRSES 595
           PALAV GP++  +               + + LLDSI WMAAPK            R+  
Sbjct: 45  PALAVQGPAIFSE------PTNDTSGSTETSSLLDSIFWMAAPKNRRSIEVNRCRRRNPH 98

Query: 594 KLIKVKNNIEPCLECGHLKQKHTLCGFCYAKVSRETALIRQQINAMEGGPLRAPTVETVV 415
           KLIKVKNNI+ C ECGHLKQKH LCG+CY KV +ETA IR+QI   EGGP +APTVETVV
Sbjct: 99  KLIKVKNNIDFCPECGHLKQKHVLCGYCYEKVRKETAEIRRQIGKQEGGPFKAPTVETVV 158

Query: 414 LYEGETPSNQDKDKRIVERPRKRPAWFS 331
           LY GETPS  D+ KRI+ER RKRP+WF+
Sbjct: 159 LYSGETPSEHDQGKRIIERERKRPSWFT 186