miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|187457615|gb|DK232261.1|DK232261 GGTTGTTTAGTTTTATTGTTGAACCCGTGTACTAGCCTGCTAGTTAGCAAGTAGGCTAAGCTTTCCCCTATGTCCTCTAC
AGAAAGCTTCAGTTCAGCTGTCACCGATTGGCTTTTTATCAATTCCTGGTGGATCCTGCTTCCTTTTATTATGCTCCTTA
TAGTGGTCGCCTTCATCGTTGCCTTTGTGTTGCTGCTTTACATGATATCGCCGCTCATCAGTCCGAAGCCTCTGAAATTA
AACGGGGCCCACGTCGTGGTGACCGGAGGCTCAGGTGGAATTGGGAAATGCATTGCAATCGAATGCTACAGACAAGGAGC
CTTTATCACTCTGGTAGCTCGTGATGAGGATAAGTTACTCCGAGCAAAGAAAGAGGTGGAAAAATTTGCCATCAATGACA
AACAGGTGGTGCTCTGTGTATCGGTCGACGTCTCCAGTGATTACACTCAAGTGGAAAATGTGATAAAGCAGGCTCAGGAG
AAGCTTGGACCGGTGGACATGCTGGTGAACTGCGCTGGAACAGCCGTCGCTGGGAAGTTCGAGGAGATGGAAGTGGAACG
TTTCAAAGAGTTAATGGAGCTGAATTACCTGGGCAGCGTCTACCCAACACGAGCCGTCATAACCACCATGAAGGAGCGAA
GA




Most similar to sp|Q6GV12|KDSR_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6GV12|KDSR_MOUSE 3-ketodihydrosphingosine reductase OS=Mus
           musculus GN=Kdsr PE=2 SV=1
          Length = 332

 Score =  239 bits (610), Expect = 1e-62
 Identities = 117/148 (79%), Positives = 132/148 (89%)
 Frame = +1

Query: 199 YMISPLISPKPLKLNGAHVVVTGGSGGIGKCIAIECYRQGAFITLVARDEDKLLRAKKEV 378
           YM+SPLISPKPL L GAHVVVTGGS GIGKCIAIECY+QGAFITLVAR+EDKLL+AKK++
Sbjct: 17  YMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDI 76

Query: 379 EKFAINDKQVVLCXXXXXXXXYTQVENVIKQAQEKLGPVDMLVNCAGTAVAGKFEEMEVE 558
           EK +INDKQVVLC        Y QVENVIKQAQEKLGPVDMLVNCAGT+++GKFEE+EV 
Sbjct: 77  EKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVS 136

Query: 559 RFKELMELNYLGSVYPTRAVITTMKERR 642
            F++LM +NYLGSVYP+RAVITTMKERR
Sbjct: 137 SFEKLMSINYLGSVYPSRAVITTMKERR 164