miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|188248223|gb|EY663609.1|EY663609 TCGGTCAACCCACGCGTCCGGAAAAAAATCACTCAGATGTCTCCGGGAGTTCCTCCGATCACTTCATTGGGGCTATATGA
TCATTTAGACAAAATTTGTCACCCCACTGAAGTGTTTGGGGGAACTCTGGGTGCCACCTGACATTACATTGTTCAATTGG
GTTTTACTATTTCTTTGTTTGGGTTTTGAGAGTGATTTTAGTAAGCTTTAATTTGCTCGGTGGCCAATGCCAATAATGAG
AACAGACGGCTAGTATCATCTCTGCAGCTCCCATCCAGTGTGTGTGAACAGCCTTTTCATTGATCATCTTCATCAAAACT
CCACTTCTCTTTTTCTCTGACTTGGAGGTCTCCACGTTGATTGCTTTACACTATTGTTTCGGTTCATCAACATTCATCCC
CAAATCAAGCATAGCCCAAGAAAGAATTGCCTTCTCAGTTGGGCTACCAGTAAACTAAGTAGTCGATTCAGAATTCGATT
TGTAAACATTACAAATGGTGTTTAAACCAAATGCTTCTTGCAGCAACTCGTACAGATTATGTGCTAATTTGAGGAACTAG
CATCGCCCTTCATAGCTTATTTTCCAATCCAAAACTCTGTAACTTTCATTTGATTTCCGGTGAGAGTGCCTGTTTTGTTA
GTGCAAATGGTTGTTGCGGAGCACAAAGTCTCACAAGCAGAGAGCTTTCTTATGATAGCATATGATCATTCATCATTTTT
TCTTTTTTTTTATCGAACAAGCCAGCGTAAGAGTAACAGCAAGAGGGCAGGCTTCAGGAATTGCCACACAAGAGTAACAG
CAAGAAGCGAGGCTTTCAGAATTGCCACGACACATGGGTACAGCAGCACCAATATGTAGATCCATCATCGACTTCGGGTT
TGTCCCAGAAATC




Most similar to sp|Q9LY77|ACA12_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LY77|ACA12_ARATH Calcium-transporting ATPase 12, plasma
           membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1
          Length = 1033

 Score =  116 bits (291), Expect = 2e-25
 Identities = 80/202 (39%), Positives = 105/202 (51%), Gaps = 16/202 (7%)
 Frame = -2

Query: 787 VAIPEACPLAVTLTLACSIXXXXXX*M---------------IICYHKKA-LCL*DFVLR 656
           VAIPE  PLAVTLTLA S+                       +IC  K   L L +  + 
Sbjct: 407 VAIPEGLPLAVTLTLAYSMKRMMSDQAMVRKLSACETMGSATVICTDKTGTLTLNEMKVT 466

Query: 655 NNHLH*QNRHSHRKSNESYRVLDWKISYEGRC*FLKLAHNLYELLQEAFGLNTICNVYKS 476
              L  ++ H       S  VLD                    LL +  GLNT  +V  S
Sbjct: 467 KFWLGQESIHEDSTKMISPDVLD--------------------LLYQGTGLNTTGSVCVS 506

Query: 475 NSESTT*FTGSPTEKAILSWAMLDLGMNVDEPKQ*CKAINVETSKSEKKRSGVLMKMINE 296
           +S ST  F+GSPTEKA+LSW +L+LGM+++  KQ  + + VET  S KKRSGVL++  ++
Sbjct: 507 DSGSTPEFSGSPTEKALLSWTVLNLGMDMESVKQKHEVLRVETFSSAKKRSGVLVRRKSD 566

Query: 295 KAVHTHWMGAAEMILAVCSHYW 230
             VH HW GAAEM+LA+CSHY+
Sbjct: 567 NTVHVHWKGAAEMVLAMCSHYY 588