miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|188250231|gb|EY660523.1|EY660523 GAATTCCTTGCTCGACCCACGCGTCCGGAATTATCATCGCCTTGGTTTGATTTGAGAGTCTTTTATGTGAGGGTCAGTAA
TTTTCCGGTCGATGATTCAACCCCTGAGTTTCTCACTCTCAACCATATCCCCTTGAGCCATGACACCCTTTTAGAAGTGA
ATGGTGTTCGAAGTAGCATTTACTCTGATGGTGTCTCTTCACTTCTTAGAAGAGATAGGGTAGATAAGAAATCTGAAGAA
GCCACATTCATAAGCACTGATAGTATTAGGTTGACAGGAAGTGTGAAATTTGAGGTGTTTGACAAAGAAGATCTCATTTT
ATCTGGGGTTCTGGAGATGTCTAATAGCAATGGTTTCACTGGGGAATCAAAAAAAAATGCGAAGCATTGGAGCATGAACT
GTGAATCAGAGATCACTGCTGGCACTGGCTTTCTGAAGGGAAAGCATATTGCAGTTCCTGAATTACCATTGCCCACAATT
GAGGTTTATGTTGCTGGCTCCTTCTCAGGAACACCTATCATCTTAACCAAGACTTTGCAGCTTAGTTTTCGAAAGAAGCA
TAACAGGAAGGGCATGTTGGATGCAATCCCAGAGTATGAGACAACTGAAAACAGAAAAAATGGATCATCAGGACTTGTTT
GGCAGGTAGCTGAGTACAGAAACTACAAACCCGAAAATAATGAAGATTACAGCAGCATGTACTGGAGGACGCAATACATG
GATGGTGAAGATGGTGAACTCTCATGGTTCAATGCTGNTGTGAAGGTTGNCGTGNNGATTGGGCTTGGCATTTGTGTTGG
CATTGGTATANNGAGTGGCTTGCTGGTGCGTACTTACCATCTACTACTCCGAACTTCAGAAGGCGGCTTTTGTGATCCAC
TCATCTAAGCTGNTAACGCACTGGNTCTTGCACATCCCAGAGCAGCTAACTTTGNCTTGTTATGA




Most similar to sp|Q8GUH2|Y1015_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8GUH2|Y1015_ARATH Uncharacterized protein At1g01500
           OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1
          Length = 327

 Score =  152 bits (385), Expect = 3e-36
 Identities = 101/258 (39%), Positives = 140/258 (54%), Gaps = 15/258 (5%)
 Frame = +1

Query: 37  SPWFDLRVFYVRVSNFPVDDSTPEFLTLNHIPLSHDTLLEVNGVRSSIYSDGVSSL-LRR 213
           S W ++R+FYVR++   V++  P+FLTL H        LEVNGVR  + S   +SL LRR
Sbjct: 40  SAWLEVRLFYVRIAPCVVEN-VPDFLTLRHPRRETGASLEVNGVR--VPSSQTASLKLRR 96

Query: 214 DRVDKKSEEATFISTDSIRLTGSVKFEVFDKEDLILSGVLEMSNSNGFTGESKKNAKHWS 393
           DRVD++S E T++ST+++R+TG V FEV+D ED++L G L+        G        W 
Sbjct: 97  DRVDRESSEVTYVSTETVRVTGCVDFEVYDNEDMVLCGNLDRIEGAWNNGTVSDPKTGWG 156

Query: 394 MNCESEITAGTGFLKGKHIAVPELP-----LPTIEVYVAGSFSGTPIILTKTLQLSFRKK 558
           M+C   I  G G + G   +V   P      P++EVY+AG   G P+ILTKT+Q S R+K
Sbjct: 157 MDC--YIAMGNGHVSGPSASVFFQPKFGVSSPSVEVYIAGCCGGVPVILTKTIQASPRRK 214

Query: 559 HNRKGMLDAIPEYE---------TTENRKNGSSGLVWQVAEYRNYKPENNEDYSSMYWRT 711
             R   LDAIPE E         T  +     S +    +E   Y   + +     Y   
Sbjct: 215 VARHVTLDAIPEDEEVGKEQDIGTIGDELARQSKVQMMESEVDEYDDSDMKMAQRYYPEG 274

Query: 712 QYMDGEDGELSWFNAXVK 765
            Y+D EDG+LSWFNA V+
Sbjct: 275 MYVD-EDGQLSWFNAGVR 291