miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|188468366|gb|EY713300.1|EY713300 CCACGCGTCCGAATATTTTAATCAACGGCCAAGATTTAATTCATCTTCATCGTCATCACAAGATCACCTGCGTTCTTTAC
TCGACCCTCTTTCCAAGTCCCAGCTCGTCGATCTCCTCTCTAGACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATA
AAAAGTGTCGCCAGTGCAGATCCAGTTCATCGAAAGCTTTTTGTTCGTGGCTTAGCTTGGAATACCACTTCGGAAACCTT
GTGTGCTGCATTTCGAGTGCATGGTGAAATAGAAGAAGGAGCTGTCATCTATGACAAAGCAACAGGAAAATCACGTGGCT
ATGGTTTCATAACATACAAGCACATGGAGTCAACCCAGAGTGCGCTAAGAGCACCTAGCAAGTTGATTGACGGTCGGTTG
GCTGTCTGTAATTTAGCTTGTGAGGGATTAAGTGGGGTGAGTGCTGTGCCTGATTTAGCACAGAGGAAGCTCTACATTGG
GGGCCTGTCACCAGAAGTAACAACTGAGGTGCTGCTGAACTTCTTTGGAAGACATGGTGAGATTGAGGAAGGTTCAGTTG
CATATGACAAGGACACAAATGAATCACGTGGATTTGTCTTTGTTACATACAAAACAGTCGAGGCAGCAAAGAAAGCCGTA
GATGATCCACACAAGACTCTTGGGGGAAGGACTATCATTGTGAAGCTTGCTGATACCCACAAGGGCAAGCCACCGCAAAC
ACAATTACCCGCAGCTGTGGTTCCAGTGCCTTTACCTTTGGGAGCCGGATATCCACAGGCTGGAAAAGCACATGCTAACA
CTCCCCCTGTTGGCTACTCATNNACCACAAACGTACCACCATATCCCACTTCTTTCTACACAGTCTAATACAGCACCTGT
GCCGTATCCTACGCAACCTCATTTNCTATCC




Most similar to sp|Q99020|ROAA_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B
           OS=Mus musculus GN=Hnrnpab PE=1 SV=1
          Length = 285

 Score =  105 bits (261), Expect = 6e-22
 Identities = 57/166 (34%), Positives = 90/166 (54%)
 Frame = +2

Query: 194 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 373
           K+FV GL+W+T+ + L   F   GE+ +  +  D  TG+SRG+GFI +K   S +  L  
Sbjct: 76  KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135

Query: 374 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 553
               +DGR+     A        A+     +K+++GGL+PE T E +  +FG+ GEIE  
Sbjct: 136 KEHRLDGRVIDPKKAM-------AMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAI 188

Query: 554 SVAYDKDTNESRGFVFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 691
            +  D   N+ RGFVF+T+K  +  KK ++    T+ G    +K+A
Sbjct: 189 ELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVA 234