miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|190819782|gb|FG136688.1|FG136688 TGAGTGAAGTTAAGCAGAGGAAGCTTCCAGAAGAATTAGCAGAAGAGGAGGATCTAAAGCTGTTAGGATTTGGGTTCCAT
GATGACGTGGATGTGCACCATCATCATAATGGAGATGGAGCCAAGGATCTTACTGGTCTTGGTCTTTGGGTCAATGCAAT
GGGTTGCTCACTGTTGGTGAGCTTAGCTTCTCTTATATGCCTGATTATTTTGCCTGTAATATTTTTAAAAGGGAAGCCGT
CAAAAGCTGTTGTTGATTCTTTGGCGTTATTTGGGGCAGGAGCCATGCTGGGGGATGCTTTCCTTCACAATTTGCCACAT
GCTTTTGGTGGTGGACGCTCCCACTCACATGATCACCATGTGGAACATGATCATCTTCATGATCACTCCGGTCATTCACA
TGCGCATTCGTTGGAGGATCTTTCTGTTGGATTGTCCATTCTGGCTGGATTGTGCTCTTTCTTATTGTGAAAGCTTGTGA
GGATGTTGAAGATTTTCTGGAGACCGATGATGGAGTCATGATCATCATCATCATCATCATCGTCTACT




Most similar to sp|Q9M647|IAR1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O49508|FB237_ARATH F-box protein At4g18380 OS=Arabidopsis
           thaliana GN=At4g18380 PE=2 SV=1
          Length = 380

 Score =  174 bits (442), Expect(2) = 5e-45
 Identities = 101/182 (55%), Positives = 115/182 (63%), Gaps = 1/182 (0%)
 Frame = +1

Query: 46  STVQIRSRIHPEPLHQPDFFDHLPDSILLLVFNRIGDVKALGRCGVVSKRFHSLVPQVEN 225
           S+  + SRIHPEP  + D FD+LPDSILLL+FN IGDVKALGRC VVSKRFHSL+PQVEN
Sbjct: 7   SSDPLLSRIHPEP-QEIDHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVEN 65

Query: 226 VVVRVDCVI-XXXXXXXXXXXXXXXXXXXPFSAIFRLIFKPLHAWTQLLATKRXXXXXXX 402
           V VRVDCVI                    PFSAIFRL+FKPL A  Q L  KR       
Sbjct: 66  VFVRVDCVISDDDSSSLLSDKPRSASAASPFSAIFRLVFKPLQALGQFL--KRSGSSSLP 123

Query: 403 XXXXXXXXITXXXXXXXXXXXXVTHHSPTQVLKNFNEIRFLRIELPAGELGIDEGVWLRG 582
                   +             VTHHSPTQVLKNF+EI+FL+IELP+GELGID+GV L+ 
Sbjct: 124 SGSSPSSLLISGGDDGEIEQGGVTHHSPTQVLKNFDEIKFLKIELPSGELGIDDGVLLKW 183

Query: 583 SA 588
            A
Sbjct: 184 RA 185



 Score = 27.7 bits (60), Expect(2) = 5e-45
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 593 YGSTLENGVILGASS 637
           +GSTLEN VILGASS
Sbjct: 187 FGSTLENCVILGASS 201


>sp|Q9FNK5|FB285_ARATH F-box protein At5g46170 OS=Arabidopsis
           thaliana GN=At5g46170 PE=2 SV=1
          Length = 395

 Score =  169 bits (428), Expect(2) = 4e-43
 Identities = 104/183 (56%), Positives = 114/183 (62%), Gaps = 8/183 (4%)
 Frame = +1

Query: 64  SRIHPEPLH--QPDFFDHLPDSILLLVFNRIGDVKALGRCGVVSKRFHSLVPQVENVVVR 237
           SRIHPEP    + D FDHLPDSILLLVFN+IGDVKALGRC VVS+RFHSLVPQV+NVVVR
Sbjct: 12  SRIHPEPPQTLEIDHFDHLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVR 71

Query: 238 VDCVI-XXXXXXXXXXXXXXXXXXXPFSAIFRL----IFKPLHAWTQLLATKR-XXXXXX 399
           VDCVI                     FSAIFRL    I KPL A  Q L TKR       
Sbjct: 72  VDCVISDDDSSSLSSIKSRSGSSAGSFSAIFRLVVGGIVKPLQALGQFLGTKRSSSSCGG 131

Query: 400 XXXXXXXXXITXXXXXXXXXXXXVTHHSPTQVLKNFNEIRFLRIELPAGELGIDEGVWLR 579
                    I+            VTHHSPTQVLKNF+EIR+LRIELP+GELGID+GV L+
Sbjct: 132 SGSSSSSLSISGDDDGGEIEQGGVTHHSPTQVLKNFDEIRYLRIELPSGELGIDDGVLLK 191

Query: 580 GSA 588
             A
Sbjct: 192 WRA 194



 Score = 26.6 bits (57), Expect(2) = 4e-43
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 593 YGSTLENGVILGASS 637
           +GSTL+N VILGASS
Sbjct: 196 FGSTLDNCVILGASS 210


>sp|Q9C534|FB19_ARATH F-box protein At1g30200 OS=Arabidopsis
           thaliana GN=At1g30200 PE=2 SV=1
          Length = 379

 Score =  144 bits (364), Expect(2) = 2e-35
 Identities = 91/191 (47%), Positives = 106/191 (55%), Gaps = 16/191 (8%)
 Frame = +1

Query: 64  SRIHPEP--LHQPDFFDHLPDSILLLVFNRIGDVKALGRCGVVSKRFHSLVPQVENVVVR 237
           SRIHPEP  L   D FD LPDS+LLL+F+++ DVK LGRC +VS+RFHSLVP VENV+VR
Sbjct: 11  SRIHPEPQSLTSFDHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHSLVPFVENVLVR 70

Query: 238 VDCVI----------XXXXXXXXXXXXXXXXXXXPFSAIFRL----IFKPLHAWTQLLAT 375
           VDCVI                              FSA+FRL    IFKP     Q+L  
Sbjct: 71  VDCVISDDDSSSSDENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFKPFQMLGQILGP 130

Query: 376 KRXXXXXXXXXXXXXXXITXXXXXXXXXXXXVTHHSPTQVLKNFNEIRFLRIELPAGELG 555
           KR               I             VTHHSPTQVLKNF EIRFL+IELP GELG
Sbjct: 131 KRSSSSFDASFSAINDEI------------GVTHHSPTQVLKNFGEIRFLKIELPTGELG 178

Query: 556 IDEGVWLRGSA 588
           I++G+ L+  A
Sbjct: 179 IEDGILLKWRA 189



 Score = 25.4 bits (54), Expect(2) = 2e-35
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +2

Query: 593 YGSTLENGVILGASS 637
           +GSTL+N +ILGASS
Sbjct: 191 FGSTLDNCMILGASS 205


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9M647|IAR1_ARATH IAA-alanine resistance protein 1
           OS=Arabidopsis thaliana GN=IAR1 PE=1 SV=3
          Length = 469

 Score =  134 bits (336), Expect = 5e-31
 Identities = 73/124 (58%), Positives = 87/124 (70%), Gaps = 3/124 (2%)
 Frame = +3

Query: 129 LTGLGLWVNAMGCSLLVSLASLICLIILPVIFLKGKPSKAVVDSLALFGAGAMLGDAFLH 308
           LTG  LW+NA+GCSLLVSLASLICL++LP++F++GKPSK  VDSLALFGAGAMLGDAFLH
Sbjct: 102 LTGFALWLNALGCSLLVSLASLICLVLLPIMFVQGKPSKWFVDSLALFGAGAMLGDAFLH 161

Query: 309 NLPHAFGGG--RXXXXXXXXXXXXXXXXXXXXXXXXLEDLSVGLSILAGLCSFLL-*KLV 479
            LPHAFGGG                           ++DLSVGLS+LAG+  FLL  KLV
Sbjct: 162 QLPHAFGGGHSHSNDHHENHDHHDHSHSDSPSHSHSIQDLSVGLSVLAGIVVFLLVEKLV 221

Query: 480 RMLK 491
           R ++
Sbjct: 222 RYVE 225