miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|197963893|gb|FL703623.1|FL703623 GATCAGGCACAACCGATGCGAAGCAATCACTTATTCACTCCACACTTTCACTGTTTCACAGATACACTCCCAAGCTATTC
GATGAAGGGTTTATTCGGGAAACAGATACCTAAGCTTCCTCAGGTCCAGCAGCTCACACAGGTTCAGTCGTTCAGACTTT
CAAGCAGTGGCTCAAGCTCAACACATACAACACCAACCCCGGAGGCAAACTCCCTCTTTCTCTCTGAGCTCACCACCTCC
ATCTAGTTGGACTGCCGGAGCTCCGGGCGCACAAAATCAGCATTGGCAGGCACTGAGATGTCGACGGTGGGCCTCAGCTC
GGCGCAGACCTCGATGGCACCATGGACGGGGTCGGACATGAAGTTGCTAATAAGGTCCTGGTTGATCGGGGCGTCCTTGT
CCACCGTCACGAAGGCCTGCTGCGTCAGGATGTAGTCGAAGCGCGGCGCCCACTTCCTTGATCCCAGGCGAGCCGTTGTG
GAGCAGTTGTCCACCATAAAGGCCACCCCACGGGCGTGCATGAAGGGGTTCAACGAGTCCACCGACTCGATCACGCTCTC
GTTGATGATCTCTGAGTAGGAGTGCCCCTTCTTCCTCAGGATCTCAATCTGAGCCATCATCAGAGCAATGTACACTCCAG
CAGTGAAAGGGATGCAGCGGGCCAAGATCGCCCTCTGGACGGGTCGAGCGCACCTTTTCACCAACCTTCACATGCGAGTT
TGATCAATGTTG




Most similar to sp|Q65XK0|ILV5_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q65XK0|ILV5_ORYSJ Ketol-acid reductoisomerase, chloroplastic
           OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1
           SV=1
          Length = 578

 Score =  276 bits (706), Expect = 1e-73
 Identities = 140/162 (86%), Positives = 147/162 (90%)
 Frame = -2

Query: 731 NIDQTRM*RLVKRCARPVQRAILARCIPFTAGVYIALMMAQIEILRKKGHSYSEIINESV 552
           NIDQTRM ++ ++         L    PFTAGVY+ALMMAQIE+LRKKGHSYSEIINESV
Sbjct: 417 NIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESV 476

Query: 551 IESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDL 372
           IESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDL
Sbjct: 477 IESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDL 536

Query: 371 ISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQSN 246
           ISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQS+
Sbjct: 537 ISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQSS 578