miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|19808959|gb|BQ049619.1|BQ049619 GCGCCGCACGGAGGTGCGGCGCCGACCAAGATGGAGACTGCCGAGCAGCCTTGAGCCGTTGAGCAGCTGAACAGAGGCCA
TGCCGGGGCACTCCGAGGCCTGAGACGACCACGCCTGTGCCGCTGAGGACCTTCATCAGGGCTCCGTCCACTTGGCCCGC
TTGGCTGTCCAATCACACTCCAGTGTCAACCACTGGCACCCAGCAGCCAAGAGAGGTGTGGCGTGGCCCTGGGGACGCAT
GGCTGAGGCAGGAACAGGTGAGCCGTCCCCCAGCGTGGAGGGCGAACACGGGACGGAGTATGACACGCTGCCTTCCGACA
CAGTCTCCCTCAGTGACTCGGACTCTGACCTCAGCTTGCCCGGTGGTGCTGAAGTGGAAGCACTGTCCCCGATGGGGCTG
CCTGGGGAGGAGGATTCAGGTCCTGATGAGCCGCCCTCACCCCCGTCAGGCCTCCTCCCAGCCACGGTGCAGCCATTCCA
TCTGAGAGGCATGAGCTCCACCTTCTCCCAGCGCAGCCGTGACATCTTTGACTGCCTGGAGGGGGCGGCCAGACGGGCTC
CATCCTCTGTGGCCCACACCAGCATGAGTGACAACGGAGGCTTCAAGCGGCCCCTAGCGCCCTCAGGCCGGTCTCCAGTG
GAAAGCCTGGGCAGGGCCCATCGGAGCCCTGCCTCCCAAGGGTGCCTCCGGTCCCCGACTACGTGGCACACCCCGAGCGC
TGGACCAAGTACAGGCCTGGAAGAGGTGAACGAGGTCAGCGAAGCAAACAAATCAGGCCACCCGCCCTGGCCCTTCCTGG
GGCTCCCAGAACCCGGGCTGGCCCCCCTGACTGCGTGGCCTTCCTTCCACCGGAATCCCTTCCACTTTTGGGGGAGGGAA
AGGTTAATTTTTCCCCAAACACGTTCCAAGGGGGCGAAAGCCGAGACACCAAAAGGAAAAAGGGGTCCTGTGGGAAAGGT
GGGAAAACACCCAN




Most similar to sp|Q9Y5U2|TSSC4_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9Y5U2|TSSC4_HUMAN Protein TSSC4 OS=Homo sapiens GN=TSSC4 PE=1
           SV=3
          Length = 329

 Score =  207 bits (528), Expect = 7e-53
 Identities = 125/218 (57%), Positives = 132/218 (60%)
 Frame = +2

Query: 239 MAEAGTGEPSPSVEGEHGTEYXXXXXXXXXXXXXXXXXXXXGGAEVEALSPMGXXXXXXX 418
           MAEAGTGEPSPSVEGEHGTEY                    GGAEVEALSPMG       
Sbjct: 1   MAEAGTGEPSPSVEGEHGTEYDTLPSDTVSLSDSDSDLSLPGGAEVEALSPMGLPGEEDS 60

Query: 419 XXXXXXXXXXXXXXATVQPFHLRGMSSTFSQRSRDIFDCLEGAARRAPSSVAHTSMSDNG 598
                         ATVQPFHLRGMSSTFSQRSRDIFDCLEGAARRAPSSVAHTSMSDNG
Sbjct: 61  GPDEPPSPPSGLLPATVQPFHLRGMSSTFSQRSRDIFDCLEGAARRAPSSVAHTSMSDNG 120

Query: 599 GFKRPLAPSGRSPVESLGRAHRSPASQGCLRSPTTWHTPSAGPSTGLEEVNEVSEANKSG 778
           GFKRPLAPSGRSPVE LGRAHRSPAS      P     P       LE+V EVSE +   
Sbjct: 121 GFKRPLAPSGRSPVEGLGRAHRSPASPRVPPVPDYVAHPERWTKYSLEDVTEVSEQSNQA 180

Query: 779 HPPWPFLGLPEPGLAPLTAWPSFHRNPFHFWGRERLIF 892
                FLG  +   AP     SF+++P    G  R+IF
Sbjct: 181 -TALAFLG-SQSLAAPTDCVSSFNQDP-SSCGEGRVIF 215