miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|204036721|gb|FD149017.1|FD149017 GGGTAACTCAGGCTTCTTCGGGCCTTTTGCTTCATGTAATATTTGACCCAAACCGACAGAGTTAATCTTATCAGTGTAAT
GTTGTTTTGAATGTCATGGCATTTGGAAAACATACATATCAAGTTTAAGTCCACTCTGAGGATAAAATAACGCCTGAACA
TGCTGCTGCCGTCGGATGTAGCGAGACTTGTGCTAGGATACCTGCAGCAGGAAGGACTGAGTGCTACAAGTCGAGCATTT
ATCCTGGAGAGTCCTAACCTGAGGGAGTATGCTGAACACAGCTCTGAGGATGGAGTTATTCCTGCCTGTGTGTTTTCTCT
TTTTGGAAAAAACCTGAACACAATTCTCAACGAATACGTTGCTGTAAAAGCGAAAGAAACATGTCAAGAGAATCAAATAC
CAGTTGTAATGACCTCGTTGTGGAAAAAGCTGGACTTCACTCTCAACCAAATCAAATCTATGCAAAACTCTCCTACTGTT
CAACAAATCCAGCGGCTCCGCACCCAGAACAGCATTCAGAATATGCGGCACCAGAGAGCCCTGTCCTCACCTCAGTCTCC
TGCCACCGGGTGCCTATCAGTGTCCACTCCAGGGAACTGTGTCCCCAGACCTGTCCCAGCTCCCCAGGGCATCCTGGGAC
ACTCCACGCCTGTGTGCTACACCTCCCAGCAGACCAGACCTTCAACAATC




Most similar to sp|A2RRX6|NPAT_XENLA

>>sp|Q9FKW4|CDPKS_ARATH Calcium-dependent protein kinase 28
           OS=Arabidopsis thaliana GN=CPK28 PE=1 SV=1
          Length = 523

 Score = 65.9 bits (159), Expect(2) = 2e-22
 Identities = 36/78 (46%), Positives = 49/78 (62%)
 Frame = +2

Query: 506 FGFNKGFAAKYDLGDEVGRGHFGYTCAATVKKGARKGESVAVKVIPKAKMTTSIAIEDVR 685
           FG++K F   Y +G  +G G FGYT  A  +     G+ VAVK + K+KM   IA+EDV+
Sbjct: 52  FGYSKDFHDHYTIGKLLGHGQFGYTYVAIHRPN---GDRVAVKRLDKSKMVLPIAVEDVK 108

Query: 686 REVKILKALSGNKTWCNF 739
           REV+IL ALSG++    F
Sbjct: 109 REVQILIALSGHENVVQF 126



 Score = 61.6 bits (148), Expect(2) = 2e-22
 Identities = 29/41 (70%), Positives = 37/41 (90%), Gaps = 1/41 (2%)
 Frame = +1

Query: 721 QNLVQFYDAYEDNDNVYIVMELCEGGELLDRILF-RGGKYS 840
           +N+VQF++A+ED+D VYIVMELCEGGELLDRIL  +G +YS
Sbjct: 121 ENVVQFHNAFEDDDYVYIVMELCEGGELLDRILSKKGNRYS 161


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|A2RRX6|NPAT_XENLA Protein NPAT OS=Xenopus laevis GN=npat PE=2
           SV=1
          Length = 1356

 Score =  174 bits (440), Expect = 7e-43
 Identities = 88/130 (67%), Positives = 109/130 (83%)
 Frame = +1

Query: 160 MLLPSDVARLVLGYLQQEGLSATSRAFILESPNLREYAEHSSEDGVIPACVFSLFGKNLN 339
           MLLPSDVARLVLGYLQQE LS+T R+FILESPNLREYAEH +++G IP CV SLFGKNL 
Sbjct: 1   MLLPSDVARLVLGYLQQEKLSSTCRSFILESPNLREYAEHYTDEGSIPGCVLSLFGKNLT 60

Query: 340 TILNEYVAVKAKETCQENQIPVVMTSLWKKLDFTLNQIKSMQNSPTVQQIQRLRTQNSIQ 519
           TILNEY+A+KAKE  +E  IPV++++LWKKLD TL+QI+SMQN   +   Q++RT+  IQ
Sbjct: 61  TILNEYIAMKAKENKEE--IPVMVSALWKKLDHTLSQIRSMQNCLVLPTSQKVRTRYGIQ 118

Query: 520 NMRHQRALSS 549
           ++RHQR L+S
Sbjct: 119 DLRHQRMLTS 128