miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|207449580|gb|FF361359.1|FF361359 ACCGATTTTTNNNTTTTTTTTTTAGATACACATATTCCTTAGAAAAAGGTACCCTAGTATAATACATGCATACACAACAG
GTGGAGAGCAACAGTATCCCTAAAAAAAATTAGGAGGAGAGCAGCAGCTTGTATGTACATTGTGTACATACATACATGCA
TTGCATAGCATCATGAGCAATCACTCTTGCACATAGAATGACTGCTCCCGGTGATATGTGTTTCCAAATACCTCAACAAC
TATATATGTATATCAACAATGGATACATGAATGCTAATCGATGGTATATATTTACGCACGCGTGTGGTGTGTAAACAATT
TGATGATCCTATCGCAGGATGATGCCGCTGAGCGGCGGCGCCGGCTGCCAGAAGTCGGAGGCGCTGTCGGCGCCTAGACG
CGGGGTAATGCACGACACCGGCACCAGGCACATCCCTCTGCTCCTCAGGTCCGACTTCTTGCCCTCGCCATCCTGTGCGT
CCTGCTCGGGACGGGCTGCTTCTGCCGAGGCATTTACGTGATCACCATGGTTCAGAGCTTGGTGACGGACGGAGGATCCA
GTGCCATGTCCCAAATACGGGTAGCTGAGAGCCTCTATTTGACCCAGGAGGAATCCGATATAGCCAATAGTCTCTTGCAG
CACGGACGCAGTGTCGGTCTTCCCAAATGGGGAAACTATTTGGTGAAGTGCTG




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  110 bits (274), Expect = 1e-23
 Identities = 63/127 (49%), Positives = 77/127 (60%), Gaps = 16/127 (12%)
 Frame = -3

Query: 691 ALHQIVSPFGKTDTASVLQETIGYIGFLLGQIEALSYPYLGHGTGSSVRHQALNHGDHVN 512
           ALHQ+VSPFGKTDTASVL E IGYI FL  QIEALS+PY G     ++RHQ    GD   
Sbjct: 275 ALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTTASGNMRHQQHLQGDRSC 334

Query: 511 ASAE---------------AARPEQDAQD-GEGKKSDLRSRGMCLVPVSCITPRLGADSA 380
              E               A+    D Q+  E  K DLRSRG+CLVP+SC T ++G+D+ 
Sbjct: 335 IFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVPISC-TLQVGSDNG 393

Query: 379 SDFWQPA 359
           +D+W PA
Sbjct: 394 ADYWAPA 400