miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|207463723|gb|FF349203.1|FF349203 ACCGATTTTNNNNTTTTTTTTTTCCTCTTCAAAACAAATTATATCCTCATTACAAAATTAGTGAAGCCTACAATACAATA
ACGTCGCGGTCTGTTTACATCGGCGGAAGCCCACGCCATTGCTCCCTGAGGACCCTGCTTTTCCTCGTACGCAACCCATC
CATCCACTACCAAAAGAGGGCGCAGGGAGCATCAAACAAGTAAAACCAGGTACACTGCATTTCCTCACTCGGCCGATGGT
TTTGCATCATCATCCATTTGATCATCTCCAGGAAGCCCAAATATCCTCAGGTTACGGTCCATAGAGCCGACGGCGATATA
TTTGGCATCAGTGCCGAACTTCGCAGAGGTCACTTTCCCTGTTCCCGACAAATCTGGTAAGGTCTTGATAAGATTCCATT
CGGTCTTGACGTTAGCTACTTGATAAACCCTTATATCTGAACCAGCAACAGCAAGATAGGTACCGCTAAAATCAAATTCC
ACAGAATTTGTCGGCGTGTCCGAATCATATGGCGAGAAAGTCCTAAAATTTCTCAATTTCCTTAGATCCCAAAGCTTGAC
ACCATCAAGAGCAGCAGTCGCCAGGAAGTAACCATTCTCAGAGAAGGACATAGCAGTGACAGGTCCAGCATGCCCCTCAA
ACTTTGCAACATTGGACTACAGACAAAAAAAATGTCCATTAGGAAATACTACCTCCGTCCCAAAATATAAGACGTTGCAG
TTCAAATTTGAACTGCAAAAACGTCTTATATTTTGGGACGGGGGTAGTATATTTCAAGCACCAACATATGCATGACCATC




Most similar to sp|Q9AV81|PUB72_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9AV81|PUB72_ORYSJ U-box domain-containing protein 72 OS=Oryza
           sativa subsp. japonica GN=PUB72 PE=2 SV=1
          Length = 527

 Score =  263 bits (671), Expect = 1e-69
 Identities = 128/143 (89%), Positives = 132/143 (92%)
 Frame = -1

Query: 656 SNVAKFEGHAGPVTAMSFSENGYFLATAALDGVKLWDLRKLRNFRTFSPYDSDTPTNSVE 477
           SNVAKFEGH GPVTAMSFSENGYFLATAALDGVKLWDLRKLRNFRT SPYDSDTPTNSVE
Sbjct: 385 SNVAKFEGHVGPVTAMSFSENGYFLATAALDGVKLWDLRKLRNFRTISPYDSDTPTNSVE 444

Query: 476 FDFSGTYLAVAGSDIRVYQVANVKTEWNLIKTLPDLSGTGKVTSAKFGTDAKYIAVGSMD 297
           FDFSG+YLAV GSD RVYQVANVK EWNL+KTLPDLSGTGKVT+ KFGTDAKYIAVGSMD
Sbjct: 445 FDFSGSYLAVGGSDTRVYQVANVKLEWNLVKTLPDLSGTGKVTNVKFGTDAKYIAVGSMD 504

Query: 296 RNLRIFGLPGDDQMDDDAKPSAE 228
           RNLRIFG PG+D   DDAKPS E
Sbjct: 505 RNLRIFGHPGEDDQMDDAKPSEE 527