miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|21284958|gb|BQ472829.1|BQ472829 CGGCACGAGGGTCATGAATGTCATCCGGGATACAAGAAAACCACTGCACCCTCAATATATTTTAGGCATGACTGCTATCC
GTGTAGCCATCCCGCTATATATATTTGGTTGTCCTAGCAACTTCATGCGCATTGAGCCCGACAAGAAATGGTGCATAGCT
GTGACAACGTTCATGGGTATCCAAGCAGCTGTGCTGCTCCTCCAGCACTATCTTGGTTCTCGCTGCTTTATTCCTCACCA
GATCCTCCCTGAGAAATACTGCTACCACAGGAAGGTAGAGGATAACACAAATCAGCCCATTGATTGTGTAATCTGCATGA
CCACAATTGATCTTTCCCAAAGAGCAAGTGAATACATGGTGGCACCGTGTGAACATATATTCCACTCGGGCTGTTTACAA
CGCTGGATGGACATCAAGATGGAGTGCCCAACTTGCAGGCGCTCTCTACCACCAGCTTAGAGGAGCAATCCTATGTACTC
CCTCCGTAACAAATATAAGAGCGTTTAGATAACTAAAGTAATGATCTAAACACTCTTATATTTCTTTACAGAGGGAGTAC
AATAT




Most similar to sp|P36096|TUL1_YEAST

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1
            OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
            GN=TUL1 PE=1 SV=1
          Length = 758

 Score =  101 bits (252), Expect = 3e-21
 Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
 Frame = +2

Query: 35   RKPLHPQYILGMTAIRVAIPLYIFGCPSNFMRIEPDKKWCIAVTTFMGIQAAVLLLQHYL 214
            + PL   +++G T IR    +Y+F   SN  R   D  + + ++ ++  Q ++L  Q  L
Sbjct: 600  KMPLLWSFVIGTTIIRSLPVVYVFTYSSNVFRHHKDVHFVVFLSLWLLFQISILYSQDVL 659

Query: 215  GSRCFIPHQILPEKYCYHRKVEDN---------TNQPIDCVICMTTIDL---------SQ 340
            GSR F+P   +P+ Y Y + + +              +DC ICM+ + +           
Sbjct: 660  GSRWFLPKHTIPDGYSYFKPLSNEYISEHGGGTAEHTVDCAICMSDVPIYIEEIPETHKV 719

Query: 341  RASEYMVAPCEHIFHSGCLQRWMDIKMECPTCRRSLPP 454
                YMV PC H+FH+ CL+ WM+ K++CP CR  LPP
Sbjct: 720  DQHSYMVTPCNHVFHTSCLENWMNYKLQCPVCRSPLPP 757