miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|213041682|gb|FF288950.1|FF288950 TTTTTTTGTTACCATACTCTGTTTAATTTTCAAACTCTCTCACACTCACTGCTCACCATTTATTAGAATTAACTTTCTTC
ACTTATATTGTTCATAAAATCCACACCACGCTGCAGGGAAGGTGGGCGTGGCTTTGGGTGACAGGACTCCTGAACAAGAC
CCACCCCGCTCTCATGCAGGAACTCCTCAGTGGTGGAAGAAAAAAAAAAATTCATAAATGTTCTTTAGTCCCTCGAGATT
TAAAGTTCCACATCACTGACGCTTGTGAGCGCCGTCGTCCTCTCGCATCACGGCTGCTCCTCGTTGCTGCTGCTCGGCGA
TCGGTTGCGGATTTGACTCCTCAGCTGTTCGATGAGTTCAGGATTCTGCTGCTGCATCTGTTGAGCGAACTGCTGCCCCG
CCTGGATCAGTCCTGACAAATCTCCAGCAGCAGCAGGTGCAGGTCCTGGTCCTGGTCCTGGTGCTGCAGCTCCGCCTCCT
ACTCCTCCTACACCTCCTCCCATTGCTCCGTAGCTTCCGGACATCATTCCAGACATCATTTGCTGCACCTGAGGATTATT
CATCAACGACGACGCCATGTTCATGAAGCCGGGGTTCGTGAGTAAACCGGCGAGGTCGACACCGCCCATCCCCGCCGTAA
GACTGGACGTCTCCATCTTCTCCTCCGCGATCTTCAGGTTGATTTTGTACGTGTCGTTGTCCGGGTCGAGCTCCAGAGCT
TTTTTATAAAAACTTGCCGCTTCTGTGTGTTTGTTGAGACTCGGCAACGCCAGACCCATCCTGCCGT




Most similar to sp|O43765|SGTA_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O43765|SGTA_HUMAN Small glutamine-rich tetratricopeptide
           repeat_field-containing protein alpha OS=Homo sapiens GN=SGTA
           PE=1 SV=1
          Length = 313

 Score =  145 bits (365), Expect = 4e-34
 Identities = 85/165 (51%), Positives = 100/165 (60%), Gaps = 1/165 (0%)
 Frame = -3

Query: 785 GRMGLALPSLNKHTEAASFYKKALELDPDNDTYKINLKIAEEKM-ETSSLTAGMGGVDLA 609
           GRMGLAL SLNKH EA ++YKKALELDPDN+TYK NLKIAE K+ E  S T G+G  D+A
Sbjct: 163 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIA 222

Query: 608 GLLTNPGFMNMASSLMNNPQVQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 429
           GLL NPGFM+MAS+LMNNPQ+QQ                                     
Sbjct: 223 GLLNNPGFMSMASNLMNNPQIQQ----------------LMSGMISGGNNPLGTPGTSPS 266

Query: 428 XGDLSGLIXXXXXXXXXXXXQNPELIEQLRSQIRNRSPSSSNEEQ 294
             DL+ LI            QNPELIEQLRSQIR+R+PS+SN++Q
Sbjct: 267 QNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIRSRTPSASNDDQ 311