miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|21975159|gb|BQ766685.1|BQ766685 TGCCCATGTCCTCCATGGTCTACAAGCACTGGAACTTCACCGAACAAGCTCTCCCCGCCGATCTAATCAAGAGGGGCATG
GCGGTGGAGGACGCATCGAGCCCGCACAAGGTGCGGCTGCTGATCAAGGACTACCCGTACGCGACCGACGGGCTGGCCGT
GTGGGACGCCATCGAGCAGTGGGTGTCGGACTACCTGACCATCTACTACCCCAACGACGGCGTGCTGCAGGGCGACGTGG
AGCTGCAGGCGTGGTGGAAGGAGGTGAGGGAGGTCGGGCACGGCGACCTCAAGGACGCGGCGTGGTGGCCAAAGATGCAG
ACGGTGGCGGAGCTGATCAAGGCGTGCGCCACCATCATCTGGACCGGGTCGGCGCTCCACGCGGTCGTCAACTTCGGGCA
GTACCCCTACTCGGGCTACCACCCCAACAAGCCGTC




Most similar to sp|Q76I22|LOX1_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q76I22|LOX1_ORYSJ Lipoxygenase 1 OS=Oryza sativa subsp. japonica
            GN=Os03g0699700 PE=2 SV=2
          Length = 863

 Score =  257 bits (656), Expect = 2e-68
 Identities = 115/143 (80%), Positives = 127/143 (88%)
 Frame = +3

Query: 6    MSSMVYKHWNFTEQALPADLIKRGMAVEDASSPHKVRLLIKDYPYATDGLAVWDAIEQWV 185
            MSS VYK+WNFTEQ LP DLIKRG+A++D SSP KV+LLIKDYPYATDGLA+W AIEQWV
Sbjct: 585  MSSAVYKNWNFTEQGLPDDLIKRGIAIKDPSSPSKVKLLIKDYPYATDGLAIWQAIEQWV 644

Query: 186  SDYLTIYYPNDGVLQGDVELQAWWKEVREVGHGDLKDAAWWPKMQTVAELIKACATIIWT 365
            ++Y  IYYPNDGVLQGDVELQAWWKEVREVGHGDLKDA WWPKMQ++ EL KAC TIIW 
Sbjct: 645  TEYCAIYYPNDGVLQGDVELQAWWKEVREVGHGDLKDADWWPKMQSLPELTKACTTIIWI 704

Query: 366  GSALHAVVNFGQYPYSGYHPNKP 434
             SALHA VNFGQYPY+GY PN+P
Sbjct: 705  ASALHAAVNFGQYPYAGYLPNRP 727