miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|221020497|gb|FD607595.1|FD607595 GGGCAGTATGGCGAGCACGGCGTCGGAGATCATTGCCTTCATGGTCTCCATCTCCGGCTGGGTGCTGGTGTCCTCCACGC
TGCCCACCGACTACTGGAAGGTGTCCACCATCGACGGCACGGTCATCACCACCGCCACCTATTGGGCCAACCTGTGGAAG
GCATGCGTTACCGACTCCACGGGCGTCTCCAATTGCAAGGATTTCCCCTCCATGCTGGCGCTGGACGGTTATATCCAGGC
ATGTCGAGGACTTATGATTGCCGCTGTCAGCCTGGGCTTTTTTGGTTCCATATTTGCCCTGTTTGGAATGAAATGTACCA
AGGTCGGAGGCTCAGATAAAGCCAAAGCTAAAATGGCTTGTTTGGCTGGGATTGTATTCATACTGTCAGGGCTGTGCTCA
ATGACCGGGTGTTCCCTGTATGCAAACAAAATCACAACGGAATTCTTTGATCCCCACTACGTGGAGCAGAAGTATGAATT
ATGAGCTGCTCTGTTTATTGGATGGGCAGGAGCCTCACTCTGCATAATTGGTGGTGTCATATTTTGCTTTTCAATATCTG
ACAACAACAAAAAAC




Most similar to sp|P78369|CLD10_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P78369|CLD10_HUMAN Claudin-10 OS=Homo sapiens GN=CLDN10 PE=1
           SV=2
          Length = 228

 Score =  374 bits (959), Expect = e-103
 Identities = 184/188 (97%), Positives = 186/188 (98%)
 Frame = +2

Query: 8   MASTASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGV 187
           MASTASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGV
Sbjct: 1   MASTASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGV 60

Query: 188 SNCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLA 367
           SNCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAK+ACLA
Sbjct: 61  SNCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLA 120

Query: 368 GIVFILSGLCSMTGCSLYANKITTEFFDPHYVEQKYEL*AALFIGWAGASLCIIGGVIFC 547
           GIVFILSGLCSMTGCSLYANKITTEFFDP +VEQKYEL AALFIGWAGASLCIIGGVIFC
Sbjct: 121 GIVFILSGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFC 180

Query: 548 FSISDNNK 571
           FSISDNNK
Sbjct: 181 FSISDNNK 188