miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|224230242|gb|GH684422.1|GH684422 ACTTGAAAGATTGCGTCTGGTCAAAGAATTAATAGTTTAAGACAATGTTCTGGCTGTATGGAGGGATCACTTTTCTTTTT
ATATGTCATGGAGCTGCTCTTCTCCCACCTTGTGACAGTAAGATCTACTGCACGGGAGAGCTGTTAAGACAGATACAGAT
GGCCAAACTGTTTGATGACAATAAGGCCTTTGTGGATATGAAATTGACTGCAGCACCTGATATTGTTTTAGGTGCCTTCT
CCAACCTAACACAAAGGTTTCGATATGGGACAGTTCCTCCTTCAGATCTACGAGTGTTTGTGAATACGTACTTTGTGAAT
AGCGGGAAAGAGTTTGAGCAGTGGAGTCCTCCAGACTGGCATGACAAGCCAAAATTGCTGTCCAAGATATCTGACCCAAA
ACTTCGCAGCTGGGCTGAGGAGTTGCACAGTTTGTGGAAATCACTTGGCCGAAAGATAAGTATTGATGTGAGAGACAATC
CTCAAATGTATTCTATGATATACTGTCCATATCCAGGCATAGTACCAGGCGGACGCTTCACTGAGTTTTACTACTGGGAT
TCATATTGGGTGCTAAATGGTCTCATATTATCTGAGATGATGGAAACAGCCAGAGGAATGATCCAAAACTTCCTACACAT
GGTGGACAGGTATGGTTTTGTTCCAAATGGAGGGAGAATTTACTATGAGAGACGCAGCCAGCCACCCTTCCTACCGCTAA
TGGTGGAGAGTTACTATGAGGCCACTGAGGATGTAGACTTTCTCAAGAAAGGCTTTGCCATTGTTGGGAA




Most similar to sp|P19813|TREA_RABIT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P19813|TREA_RABIT Trehalase OS=Oryctolagus cuniculus GN=TREH
           PE=1 SV=1
          Length = 578

 Score =  277 bits (709), Expect = 5e-74
 Identities = 128/225 (56%), Positives = 164/225 (72%)
 Frame = +3

Query: 96  ALLPPCDSKIYCTGELLRQIQMAKLFDDNKAFVDMKLTAAPDIVLGAFSNLTQRFRYGTV 275
           AL PPC+S+IYC GELL Q+QMA+L+ D+K FVDM L+ APD VL +F+ L   +   TV
Sbjct: 23  ALPPPCESQIYCHGELLHQVQMARLYPDDKQFVDMPLSTAPDQVLQSFAELAATYN-NTV 81

Query: 276 PPSDLRVFVNTYFVNSGKEFEQWSPPDWHDKPKLLSKISDPKLRSWAEELHSLWKSLGRK 455
           P   L  FV  +F   G+E E W+P DW + P+ L KISDPKLR+WAE+LH LWK LG+K
Sbjct: 82  PREQLEKFVQEHFQAVGQELESWTPGDWKESPQFLQKISDPKLRAWAEQLHLLWKKLGKK 141

Query: 456 ISIDVRDNPQMYSMIYCPYPGIVPGGRFTEFYYWDSYWVLNGLILSEMMETARGMIQNFL 635
           I  +V   P+ +S+IY  +P IVPGGRF EFYYWDSYWV+ GL+LSEM ET +GM+QNFL
Sbjct: 142 IKPEVLSQPERFSLIYSQHPFIVPGGRFVEFYYWDSYWVMEGLLLSEMAETVKGMLQNFL 201

Query: 636 HMVDRYGFVPNGGRIYYERRSQPPFLPLMVESYYEATEDVDFLKK 770
            +V  YG +PNGGR+YY +RSQPP L LM++ Y   T D+ FL++
Sbjct: 202 DLVTAYGHIPNGGRVYYLQRSQPPLLTLMMDRYVAHTGDLAFLRE 246