miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|226260011|gb|GO409784.1|GO409784 GGGGAGGTGGAGAAAGAAGAAGAAGAAGAAGAAGAAGTGCCTCCATCCCCTCCTACTATCAAGGAAGAAGAGGAAGACGA
GGAGCAAGTCCATGAAGAAAAGGTACCATCACGATCATCAACACCCGTGGAAGACCCCCAGCCATCCTCTAGCAAGGCCC
CGCCTCCTCAAAAATCCTGGGCAAGTCTCTTCCGCTCCTCCAATACAGAAAGCCCTTCCTTTGCTGAATGCGCGAGCGAG
AAAAGTGCCGGCAGCAACAAGCCCACGGCCCGAATTTCTCCCAATAATGCCTCCCTGGAAGAGCGACCCCTTCCCTCGGG
CGGGAATGGACCGGAATATCTCTCATCTAAGGAAGGACAGCTAGGAGAGTTCCTCAAGAACTACGCCCTAACCACAAGAG
CTTTTTCATGAAGCCCCGAGGCCTCAGCAACAGAAGTAACTGGTGCTTTGTCAACGCCATTTTACAAGCTCTCCTGGGCT
GCCCACCCTTCTTCAATCTGATTAGAGCCCTGCCGCCCCTCCTGCTGGAAAATGGCTCCGTTCTCAAATCCCTCAGTGAG
TTCATGAGCGAGTTTTCCCCCATGGAAAAGTTCCCTAAGCAGCATCATCGAAGGAACAAAAAGCCTGAGGATCTATTAAC
GGGGACCACTTTCGAGGCAGCATCCATCTTTCGCATCCTCCTCTCCCTCCCATCCACGGATACCTTTAAGGTCATCGAGG
GGCGACAGGAGGACGCAGAGGAATTTCTGACCTTTCTTTTGAACCGTGTCAATGACGAAATGCTTGCTGTACTCAAGAAG
TTGGATGACAATCCCAATAAGAGGGATGAGGGGGATCCTAACGATTCTAACAACATAACAACACGGACGGAGAGGAGGAT
TGCTGGAAGGAAAGTGGGCCAAAAACAAAGGACCTACACGCGTCGACGGGGTCTGGGAACACCCCATTGGC




Most similar to sp|Q2NL57|UB10A_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q2NL57|UB10A_XENLA Ubiquitin carboxyl-terminal hydrolase 10-A
           OS=Xenopus laevis GN=usp10-a PE=2 SV=1
          Length = 791

 Score =  104 bits (259), Expect = 1e-21
 Identities = 60/149 (40%), Positives = 91/149 (61%), Gaps = 6/149 (4%)
 Frame = +3

Query: 375 QELRPNHKSFFMKPRGLSNRSNWCFVNAILQALLGCPPFFNLIRALPPLL-----LENGS 539
           +E++  HK   ++PRGL N+ NWC++NA LQAL+ CPP ++L++++P          +  
Sbjct: 394 EEVKLVHKPVSLQPRGLINKGNWCYINATLQALVACPPMYHLMKSIPVYTKAQKPCTSTP 453

Query: 540 VLKSLSEFMSEFSPMEKFPKQHHRRNKK-PEDLLTGTTFEAASIFRILLSLPSTDTFKVI 716
           ++ S    M+EF+ M   PK      +K   D+  G  FE A I+R+L    S+ + K  
Sbjct: 454 MIDSFVRLMNEFTNMPILPKAKQAPGEKVVRDIRPGAPFEPAYIYRLLTVFKSSLSEK-- 511

Query: 717 EGRQEDAEEFLTFLLNRVNDEMLAVLKKL 803
            GRQEDAEE+L F+LN +++EMLA LKKL
Sbjct: 512 -GRQEDAEEYLGFILNGLHEEMLA-LKKL 538