miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|226769201|gb|GO525107.1|GO525107 CACGAGGATTTCTTTAATAATAACAAATTATATCTTGTTCTTTTTTCTGTTTCACACCTTAGCCTTTCTCTCTCAAGAAA
TACTACCTGATCAGGCTATAAATTACAAATTAAGCTTTGAAATATTATGTCAATGGATTTGATGGCATCCGAACGCGTTT
GTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTGAGTGTTCCATGCAATAGTTCAATGAATATGGTGACGGTG
AGATGTGGGCATTGTGCCAATCTGCTCTCTGTTAATATTGGAGGTTCCCTTCAGTCGACTACCATTCCTCCTCATCAAGA
TCCCCAGAAACAACACCTGAGCTCTGAGGATTCAAATAAGAACTGCGGCTCATCATCATCATCATCATCATCATCATCCA
AATCCAACAAGTTTGGTCATGCATTTGAGTCTCTAGAGCTTCATGACCAACCTAGAATCTCTCCCATACGCCCACCAGAG
AAAAGACAGCGGGTTCCTTCAGCATATAACAGGTTTATCAAGGAGGAGATCCAAAGGATTAAGGCCAGTAATCCTGACAT
TAGCCATAGGGAAGCTTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCCCACATTCACTTTG




Most similar to sp|Q9XFB0|YAB2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2
           OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1
          Length = 184

 Score =  194 bits (493), Expect = 4e-49
 Identities = 104/169 (61%), Positives = 118/169 (69%), Gaps = 3/169 (1%)
 Frame = +1

Query: 127 MSMDLMASERVCYVHCNFCNTILAVSVPCNSSMNMVTVRCGHCANLLSVNIGGSLQSTTI 306
           MS+D  +SERVCYVHC+FC TILAVSVP  S   +VTVRCGHC NLLS+NIG SL  T+ 
Sbjct: 1   MSVDF-SSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSA 59

Query: 307 PP-HQD--PQKQHLXXXXXXXXXXXXXXXXXXXXXXXXFGHAFESLELHDQPRISPIRPP 477
           PP HQD  P +QH                           +  E+++  + PR+ PIRPP
Sbjct: 60  PPIHQDLQPHRQHTTSLVTRKDCASSSRST---------NNLSENID-REAPRMPPIRPP 109

Query: 478 EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHF 624
           EKRQRVPSAYNRFIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHF
Sbjct: 110 EKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHF 158