miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|237518749|gb|GO791935.1|GO791935 TTGTCTTTGCATCAATACCTGCACCAATATTTGCTGCTCTCTACTGCGTGTTCTTTGCATATGTTGGTTCTGCTGGGCTT
GGTTTCCTTCAGTTCTGCAACCTCAATAGCTTCAGAACCAAGTTCATCCTGGGGTCCTCACTGTTCCTGGGCCTTTCAAT
TCCTCAGTACTTCAATGAGTACACATCTGTTGCTGGTTTTGGCCCTGTTCACACTCGCGCAAGATGGTTCAATGACATGG
TGAACGTGCTCTTCTCGTCAAAGGCTTTTGTTGGTGGCATTGTTGCATACGTGCTGGACAACACCCTTCACAGGCATGAG
GCTACTGTCAGGAAAGACCGTGGGTATCACTGGTGGGATAAGTTCAGGTCATACAGGACCGACACAAGGAGCGAGGAGTT
CTATTCCCTGCCATTCAACCTGAACAAGTTCTTCCCCTCGGTTTGAGGATACTGTGATTAGTGCAAGACGCTAAGGTTCT
GTACTGTCTGTCCAGCCCTACCTATCTGGAACAGCCAAACCATTGGGCTCGGTAACAAGGTGCGAATCAAACATAGTGTT
TCGGTGCCTCGCTAAAACCATCGTCCTATGTTAGGCCAGTGCTGTATATTCGGTACTCTATTCGGGGACAAAAAATACTC
TCTCTGATCCATAATAAGTTTCATGGTTTTAGTTTAGATTTGAACTAAAACCATGACCTTTATTATGGAACGGAGGGAGT
AGGAATTTTTTGGCAAAAAAAAAAAAAAAAAAA




Most similar to sp|Q27GI3|NAT6_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q27GI3|NAT6_ARATH Nucleobase-ascorbate transporter 6
           OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2
          Length = 532

 Score =  231 bits (589), Expect = 4e-60
 Identities = 106/147 (72%), Positives = 121/147 (82%)
 Frame = +3

Query: 3   VFASIPAPIFAALYCVFFAYVGSAGLGFLQFCNLNSFRTKXXXXXXXXXXXXXPQYFNEY 182
           VFASIPAPI AALYC+FFAYVG+ GL FLQFCNLNSFRTK             PQYFNEY
Sbjct: 386 VFASIPAPIIAALYCLFFAYVGAGGLSFLQFCNLNSFRTKFILGFSVFLGLSIPQYFNEY 445

Query: 183 TSVAGFGPVHTRARWFNDMVNVLFSSKAFVGGIVAYVLDNTLHRHEATVRKDRGYHWWDK 362
           T++ G+GPVHT ARWFNDMVNV FSS+ FV G VA+ LDNTLH+ ++++RKDRG HWWDK
Sbjct: 446 TAIKGYGPVHTGARWFNDMVNVPFSSEPFVAGSVAFFLDNTLHKKDSSIRKDRGKHWWDK 505

Query: 363 FRSYRTDTRSEEFYSLPFNLNKFFPSV 443
           FRS++ DTRSEEFYSLPFNLNK+FPSV
Sbjct: 506 FRSFKGDTRSEEFYSLPFNLNKYFPSV 532