miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|237566177|gb|GO847056.1|GO847056 CTATTTGGGACTGGAAATGGGTCTTCTGTATCAATTGAAAATGCCGGGTTGCTAGCCTTGACACGTGTTGGTAGCCGAAG
AGTTGTGCAGATATCAGCTAGTTTTATGATATTCTTCTCTATTCTTGGAAAATTTGGAGCTGTCTTTGCATCAATACCTG
CACCAATATTTGCTGCTCTCTACTGCGTGTTCTTTGCATATGTTGGTTCTGCTGGGCTTGGTTTCCTTCAGTTCTGCAAC
CTCAATAGCTTCAGAACCAAGTTCATCCTGGGGTTCTCACTGTTCCTGGGCCTTTCAATTCCTCAGTACTTCAATGAGTA
CACATCTGTTGCTGGTTTTGGCCCTGTTCACACTCGCGCAAGATGGTTCAATGACATGGTGAACGTGCTCTTCTCGTCAA
AGGCTTTTGTTGGTGGCATTGTTGCATACGTGCTGGACAACACCCTTCACAGGCATGAGGCTACTGTCAGGGAAGACCGT
GGGTATCACTGGTGGGATAAGTTCAGGTCATACAGGACCGACACAAGGAGCGAGGAGTTCTATTCCCTGCCATTCAACCT
GAACAAGTTCTTCCCCTCGGTTTGAGGATACTGTGATTAATGCAAGACGCTAAGGTTCTGTACTGTCTGTCCAGCCCTAC
CTATCTGGAACAGCCAAACCATTGGGCTCGGTAACAAGGTGCGAATCAAACATAGTGTTTCGGTGCCTCGCTAAAACCAT
CGTCCTATGTTAGGCCAGTGCTGTATATTCGGTACTCTATTCGGGGACAAAAAATACTCTCTCTGATCCATAATAAGTTT
CATGGTTTTAGTTTAGATTTGAACTAAAACCATGACCTTTATTATGGAACGGAGGGAGTAGGAATTTTTTGGCAATCATT
TGCATATGGAAAGGCATGCTGGTTCAGTACAAGTCTCATTTCAGAGTGAGGCCA




Most similar to sp|Q27GI3|NAT6_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q27GI3|NAT6_ARATH Nucleobase-ascorbate transporter 6
           OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2
          Length = 532

 Score =  310 bits (794), Expect = 9e-84
 Identities = 148/194 (76%), Positives = 166/194 (85%)
 Frame = +1

Query: 1   LFGTGNGSSVSIENAGLLALTRVGSRRVVQISASFMIFFSILGKFGAVFASIPAPIFAAL 180
           LFGTG GSSVS+ENAGLLALTRVGSRRVVQI+A FMIFFSILGKFGAVFASIPAPI AAL
Sbjct: 339 LFGTGAGSSVSVENAGLLALTRVGSRRVVQIAAGFMIFFSILGKFGAVFASIPAPIIAAL 398

Query: 181 YCVFFAYVGSAGLGFLQFCNLNSFRTKXXXXXXXXXXXXXPQYFNEYTSVAGFGPVHTRA 360
           YC+FFAYVG+ GL FLQFCNLNSFRTK             PQYFNEYT++ G+GPVHT A
Sbjct: 399 YCLFFAYVGAGGLSFLQFCNLNSFRTKFILGFSVFLGLSIPQYFNEYTAIKGYGPVHTGA 458

Query: 361 RWFNDMVNVLFSSKAFVGGIVAYVLDNTLHRHEATVREDRGYHWWDKFRSYRTDTRSEEF 540
           RWFNDMVNV FSS+ FV G VA+ LDNTLH+ ++++R+DRG HWWDKFRS++ DTRSEEF
Sbjct: 459 RWFNDMVNVPFSSEPFVAGSVAFFLDNTLHKKDSSIRKDRGKHWWDKFRSFKGDTRSEEF 518

Query: 541 YSLPFNLNKFFPSV 582
           YSLPFNLNK+FPSV
Sbjct: 519 YSLPFNLNKYFPSV 532