| EST name | EST sequence |
| gi|238202213|gb|GR072769.1|GR072769 | AGAGAAAGGAAAATATCTTTAGAAGATAAACTAGTAGAGTACATAAACAACAATCCCATCACAGCAGCAGACTAATTTTT CATTTCTTTTTTTCCTACTCCAGAAAATACCCCATTACAAAAAGAAAAAAAAAAGATATACCATTAAACAAAAGGAAGGG AAACTATTTATCATCATAAAAGGGTAAACATAGTTGCGAGGGGATGGATTACATAATTTCATAAGCTTCCATTTTTCATC TTCACTCGTCGTCGTCGTCATCATCATCATCGGCGCTGCCGTCCTCGTCATCATCGTCGTCTTCGTCATCGTTCACTTCC GACCTTGACTTGTCGGACTCCTCTTCTGTGGGCCCATCGCTCAATTTTTTGTTGTAAGCCTGAAGGGTTTTTTCATACTC GCCCTTTCGCTTCTCAGCCTTGGCTATGTAAGGAGCTTTTTCAGCTTCTGTGAGAGATTTCCACTTGTCACCACCAGCTT TCCCAACAGCGGCGACTGATTTGTTGTTTGGGTGCTTCTCTTTGTACGTTTTCCTGAAGTCCTCCATGAAGACGAAGAAG GCACTAGCAGGCCTCTTTGGCTTGTTTGGGTCCTTAACCGGCTTTCCCTTCTTCACCACCGGTTTTTTCCCACCTGCTGC TCCTTTCTTCACTGCTAGCTTAGGATCAGCTTTCTTGGACTCGGTCTTCGATCTGCCTCCTTTCATGGCTCCCCTAACAA ATAATGAATGATAGATAACCTAGAGAGAGAGAGAGTGATGTGGTAGTGAG |
Most similar to sp|P40619|HMGL_IPONI
>BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q9SZA3|EIF3K_ARATH Eukaryotic translation initiation factor 3
subunit K OS=Arabidopsis thaliana GN=TIF3K1 PE=2 SV=1
Length = 226
Score = 140 bits (353), Expect(4) = 5e-42
Identities = 70/70 (100%), Positives = 70/70 (100%)
Frame = +2
Query: 86 EQSSYTVEQLVALNPFNPEILPDLENYVNVTSQTYSLEVNLCLLRLYQFEPERMNTHIVA 265
EQSSYTVEQLVALNPFNPEILPDLENYVNVTSQTYSLEVNLCLLRLYQFEPERMNTHIVA
Sbjct: 10 EQSSYTVEQLVALNPFNPEILPDLENYVNVTSQTYSLEVNLCLLRLYQFEPERMNTHIVA 69
Query: 266 RILVKALMAM 295
RILVKALMAM
Sbjct: 70 RILVKALMAM 79
Score = 48.1 bits (113), Expect(4) = 5e-42
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = +1
Query: 298 TPDFSLCXFLIPXRVQMXXQFKSLIVL 378
TPDFSLC FLIP RVQM QFKSLIVL
Sbjct: 81 TPDFSLCLFLIPERVQMEEQFKSLIVL 107
Score = 22.7 bits (47), Expect(4) = 5e-42
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 60 MGVEIQSPQNRA 95
MGVEIQSPQ ++
Sbjct: 1 MGVEIQSPQEQS 12
Score = 20.8 bits (42), Expect(4) = 5e-42
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Frame = +3
Query: 381 HYLXXXGFPQFWGXXSXTXNFW-GXPGF 461
HYL F QFW + + PGF
Sbjct: 109 HYLETGRFQQFWDEAAKNRHILEAVPGF 136
>sp|Q94HF1|EIF3K_ORYSJ Eukaryotic translation initiation factor 3
subunit K OS=Oryza sativa subsp. japonica GN=TIF3K1 PE=2
SV=1
Length = 226
Score = 99.8 bits (247), Expect(3) = 2e-28
Identities = 51/77 (66%), Positives = 67/77 (87%), Gaps = 4/77 (5%)
Frame = +2
Query: 77 IAAEQS--SYTVEQLVALNPFNPEILPDLENYVN--VTSQTYSLEVNLCLLRLYQFEPER 244
+A+EQ+ SYTVE+LVA+NP+NP+IL DLE +VN V++QTY+L+ NL LLRLYQFEPER
Sbjct: 1 MASEQAAESYTVEELVAVNPYNPDILNDLEGFVNDQVSNQTYNLDANLSLLRLYQFEPER 60
Query: 245 MNTHIVARILVKALMAM 295
++ IV+RIL+KALMAM
Sbjct: 61 LSVQIVSRILIKALMAM 77
Score = 43.1 bits (100), Expect(3) = 2e-28
Identities = 20/26 (76%), Positives = 21/26 (80%)
Frame = +1
Query: 301 PDFSLCXFLIPXRVQMXXQFKSLIVL 378
PDFSLC FLIP VQM QFK+LIVL
Sbjct: 80 PDFSLCLFLIPEHVQMEEQFKTLIVL 105
Score = 23.1 bits (48), Expect(3) = 2e-28
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Frame = +3
Query: 381 HYLXXXGFPQFWGXXSXTXNFWG-XPGF 461
HYL F QFW S N PGF
Sbjct: 107 HYLETARFRQFWDEASKNRNILDVVPGF 134
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 149 bits (376), Expect = 2e-35
Identities = 75/89 (84%), Positives = 78/89 (87%), Gaps = 1/89 (1%)
Frame = -2
Query: 574 RPASAFFVFMEDFRKTYKEKHPNNKSVAAVGKAGGDKWKSLTEAEKAPYIAKAEKRKGEY 395
RP SAFFVFMEDFRKTYKEKHPNNKSVA VGKAGGDKWK LT AEKAP+I+KAEKRK EY
Sbjct: 38 RPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEY 97
Query: 394 EKTLQAYNKKLSDGPT-EEESDKSRSEVN 311
EK LQAYNKK + G EEESDKSRSEVN
Sbjct: 98 EKNLQAYNKKQAAGAAEEEESDKSRSEVN 126