miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|24218296|gb|BU967490.1|BU967490 CGGCACGAGGCTTGGTGCAGCTTGCAAAGCTAGCGAACCTTCATGTTACCGCCACCTGCGGCGCCCGCAACATGGATCTT
GTGAAGAGCTTGGGCGCGGATGAGGTGATGGACTACAAGACCCCAGAGGGGACGAGCCTGCAGAGCCCCTCCGGCAGGAA
GTACGACGGCGTGGTTCACTGCACCGTCGGTGTCAGCTGGTCGTCTTTCCAGCCATTGCTGACTGACGCCGGGAGAGTTA
TCGACATCACCCCCAATTTCTCGGCCATCCTCACATCTGCGCTGCACTGGGTGACGTTCTCCAAGAAGCGCCTCGTGCCC
CTGCTCCTGTCGCCCAACAAGGCGGACCTGGAGTTCTTGGTCGGGCTGCTCAAGGAAGGCAAGCTGAAGACGGTGATCGA
CTCGAGGTTCCCCTTGAGCGACGCAGGCAAGGCGTGGCAAAGCAGTATCGATGGCCATGCCACTGGTAAGATTGTTGTTG
AGATGGAGAGCTGATTGTCGTCGATGCTTATATAGTACTCCCTCCGTCCGGAAATACTTGTTCTAGAAATGTTTGTTCTA
GAAATGTACAAAATGGACGTATCTCCATAACTAAAATAAATCTAGATACATCTATTTCTAGG




Most similar to sp|Q9SV68|QORH_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SV68|QORH_ARATH Putative quinone-oxidoreductase homolog,
           chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2
           SV=1
          Length = 329

 Score =  207 bits (526), Expect = 6e-53
 Identities = 102/152 (67%), Positives = 124/152 (81%)
 Frame = +3

Query: 15  VQLAKLANLHVTATCGARNMDLVKSLGADEVMDYKTPEGTSLQSPSGRKYDGVVHCTVGV 194
           VQLAKLAN HVTATCGARN++ VKSLGADEV+DYKTPEG +L+SPSG+KYD VVHC  G+
Sbjct: 173 VQLAKLANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAVVHCANGI 232

Query: 195 SWSSFQPLLTDAGRVIDITPNFSAILTSALHWVTFSKKRLVPLLLSPNKADLEFLVGLLK 374
            +S F+P L++ G+VIDITP  +A+ T A+  +T SKK+LVPLLL P   +LEF+V L+K
Sbjct: 233 PFSVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMVNLVK 292

Query: 375 EGKLKTVIDSRFPLSDAGKAWQSSIDGHATGK 470
           EGK+KTVIDS+ PLS A  AW  SIDGHATGK
Sbjct: 293 EGKVKTVIDSKHPLSKAEDAWAKSIDGHATGK 324