miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|24300288|gb|CA022914.1|CA022914 CGGCACGAGGATCGAGCCCGCACAAGGTGCGGCTGCTGATCAAGGACTACCCGTACGCGACCGACGGGCTGGCCGTGTGG
GACGCCATCGAGCAGTGGGTGTCGGACTACCTGACCATCTACTACCCCAACGACGGCGTGCTGCAGGGCGACGTGGAGCT
GCAGGCGTGGTGGAAGGAGGTGAGGGAGGTCGGACACGGCGACCTCAAGGACGCGGCGTGGTGGCCAAAGATGCAGACGG
TGGCGGAGCTGATCAAGGCGTGCGCCACCATCATCTGGACCGGGTCGGCGCTCCACGCGGGCGTCAACTTCGGGCAGTAC
CCCTACTCGGGCTACCACCCCAACAAGCCGTCGGCGAGCCGGAGGCCGATGCCGGTGCAGGGGAGCGAGGAGTACGCGGA
GCTGGAGCGAGACCCGGAGAAGG




Most similar to sp|P29250|LOX2_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P29250|LOX2_ORYSJ Lipoxygenase 2 OS=Oryza sativa subsp. japonica
            GN=LOX1.1 PE=2 SV=2
          Length = 870

 Score =  248 bits (633), Expect = 8e-66
 Identities = 110/137 (80%), Positives = 123/137 (89%)
 Frame = +3

Query: 12   SSPHKVRLLIKDYPYATDGLAVWDAIEQWVSDYLTIYYPNDGVLQGDVELQAWWKEVREV 191
            +SP+KVRLLI+DYPYA DGLAVW AIEQW ++YL IYYPNDGVLQGD ELQAWWKEVREV
Sbjct: 622  ASPYKVRLLIEDYPYANDGLAVWHAIEQWATEYLAIYYPNDGVLQGDAELQAWWKEVREV 681

Query: 192  GHGDLKDAAWWPKMQTVAELIKACATIIWTGSALHAGVNFGQYPYSGYHPNKPSASRRPM 371
            GHGD+KDA WWP+M+TVAEL+KACATIIW GSALHA VNFGQYPY+GY PN+PS SRRPM
Sbjct: 682  GHGDIKDATWWPEMKTVAELVKACATIIWIGSALHAAVNFGQYPYAGYLPNRPSVSRRPM 741

Query: 372  PVQGSEEYAELERDPEK 422
            P  G++EY EL RDPEK
Sbjct: 742  PEPGTKEYDELARDPEK 758