miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|24300822|gb|CA023448.1|CA023448 CGGCACGAGGGAGCTGCAGGCGTGGTGGAAGGAGGTGAGGGAGGTCGGGCACGGCGACCTCAAGGACGCGGCGTGGTGGC
CAAAGATGCAGACGGTGGCGGAGCTGATCAAGGCGTGCGCCACCATCATCTGGACCGGGTCGGCGCTCCACGCGGCCGTC
AACTTCGGGCAGTACCCCTACTCGGGCTACCACCCCAACAAGCCGTCGGCGAGCCGGAGGCCGATGCCGGTGCAGGGGAG
CGAGGAGTACGCGGAGCTGGAGCGAGACCCGGAGAAGGCCTTCATCCGCACCATCACCAGCCAGTTCCATGCCCTGGTGG
GCATCTCGCTCATGGAGATCCTCTCCAAGCACTCCTCCGACGAGGTCTACCTGGGCCAGCACGACACGCCGGCGTGGACG
TCGGACGCCAAGGCGCTGGAGGCGTTCAAGCGGTTCGGGGCGAAGCTGGAGGGCATCGAGAAGC




Most similar to sp|P29250|LOX2_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P29250|LOX2_ORYSJ Lipoxygenase 2 OS=Oryza sativa subsp. japonica
            GN=LOX1.1 PE=2 SV=2
          Length = 870

 Score =  264 bits (675), Expect = 2e-70
 Identities = 123/153 (80%), Positives = 135/153 (88%)
 Frame = +2

Query: 2    GTRELQAWWKEVREVGHGDLKDAAWWPKMQTVAELIKACATIIWTGSALHAAVNFGQYPY 181
            G  ELQAWWKEVREVGHGD+KDA WWP+M+TVAEL+KACATIIW GSALHAAVNFGQYPY
Sbjct: 667  GDAELQAWWKEVREVGHGDIKDATWWPEMKTVAELVKACATIIWIGSALHAAVNFGQYPY 726

Query: 182  SGYHPNKPSASRRPMPVQGSEEYAELERDPEKAFIRTITSQFHALVGISLMEILSKHSSD 361
            +GY PN+PS SRRPMP  G++EY EL RDPEK F+RTIT Q  A+VGISL+EILSKHSSD
Sbjct: 727  AGYLPNRPSVSRRPMPEPGTKEYDELARDPEKVFVRTITKQMQAIVGISLLEILSKHSSD 786

Query: 362  EVYLGQHDTPAWTSDAKALEAFKRFGAKLEGIE 460
            EVYLGQ DTP WTSDAKALEAFKRFGA+L  IE
Sbjct: 787  EVYLGQRDTPEWTSDAKALEAFKRFGARLTEIE 819