miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|24301305|gb|CA023931.1|CA023931 CGGCACGAGGGACGCATCGAGCCCGCACAAGGTGCGGCTGCTGATCAAGGACTACCCGTACGCGACCGACGGGCTGGCCG
TGTGGGACGCCATCGAGCAGTGGGTGTCGGACTACCTGACCATCTACTACCCCAACGACGGCGTGCTGCAGGGCGACGTG
GAGCTGCAGGCGTGGTGGAAGGAGGTGAGGGAGGTCGGCCACGGCGACCTCAAGGACGCGGCGTGGTGGCCAAAGATGCA
GACGGTGGCGGAGCTGATCAAGGCGTGCGCCACCATCATCTGGACCGGGTCGGCGCTCCACGCGGCCGTCAACTTCGGGC
AGTACCCCTACTCGGGCTACCACCCCAACAAGCCGTCGGCGAGCCGGAGGCCGATGCCGGTGCAGGGGAGCGAGGAGTAC
GCGGAGCTGGAGCGAGACCCGGAGAAG




Most similar to sp|P29250|LOX2_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P29250|LOX2_ORYSJ Lipoxygenase 2 OS=Oryza sativa subsp. japonica
            GN=LOX1.1 PE=2 SV=2
          Length = 870

 Score =  251 bits (642), Expect = 8e-67
 Identities = 112/139 (80%), Positives = 125/139 (89%)
 Frame = +2

Query: 11   DASSPHKVRLLIKDYPYATDGLAVWDAIEQWVSDYLTIYYPNDGVLQGDVELQAWWKEVR 190
            D +SP+KVRLLI+DYPYA DGLAVW AIEQW ++YL IYYPNDGVLQGD ELQAWWKEVR
Sbjct: 620  DPASPYKVRLLIEDYPYANDGLAVWHAIEQWATEYLAIYYPNDGVLQGDAELQAWWKEVR 679

Query: 191  EVGHGDLKDAAWWPKMQTVAELIKACATIIWTGSALHAAVNFGQYPYSGYHPNKPSASRR 370
            EVGHGD+KDA WWP+M+TVAEL+KACATIIW GSALHAAVNFGQYPY+GY PN+PS SRR
Sbjct: 680  EVGHGDIKDATWWPEMKTVAELVKACATIIWIGSALHAAVNFGQYPYAGYLPNRPSVSRR 739

Query: 371  PMPVQGSEEYAELERDPEK 427
            PMP  G++EY EL RDPEK
Sbjct: 740  PMPEPGTKEYDELARDPEK 758