miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|24305353|gb|CA027979.1|CA027979 CTCTACTACCCAACGACGGCGTGCTGCAGGGCGACGTGGAGCTGCAGGCGTGGTGGAAGGAGGTGAGGGAGGTCGGGCAC
GGCGACCTCAAGGACGCGGCGTGGTGGCCAAAGATGCAGACGGTGGCGGAGCTGATCAAGGCGTGCGCCACCATCATCTG
GACCGGGTCGGCGCTCCACGCGGCCGTCAACTTCGGGCAGTACCCCTACTCGGGCTACCACCCCAACAAGCCGTCGGCGA
GCCGGAGGCCGATGCCGGTGCAGGGGAGCGAGGAGTACGCGGAGCTGGAGCGAGACCCGGAGAAGGCCTTCATCCGCACC
ATCACCAGCCAGTTCCATGCCCTGGTGGGCATCTCGCTCATGGAGATCCTCTCCAAGCACTCCTCCGACGAGGTCTACCT
GNGCCAGCACGACACGCCGGCGTGGACGTCGGACGCCAAGGCGCTGGAGGCGTTC




Most similar to sp|P29250|LOX2_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P29250|LOX2_ORYSJ Lipoxygenase 2 OS=Oryza sativa subsp. japonica
            GN=LOX1.1 PE=2 SV=2
          Length = 870

 Score =  265 bits (676), Expect = 1e-70
 Identities = 122/149 (81%), Positives = 133/149 (89%)
 Frame = +3

Query: 9    PNDGVLQGDVELQAWWKEVREVGHGDLKDAAWWPKMQTVAELIKACATIIWTGSALHAAV 188
            PNDGVLQGD ELQAWWKEVREVGHGD+KDA WWP+M+TVAEL+KACATIIW GSALHAAV
Sbjct: 660  PNDGVLQGDAELQAWWKEVREVGHGDIKDATWWPEMKTVAELVKACATIIWIGSALHAAV 719

Query: 189  NFGQYPYSGYHPNKPSASRRPMPVQGSEEYAELERDPEKAFIRTITSQFHALVGISLMEI 368
            NFGQYPY+GY PN+PS SRRPMP  G++EY EL RDPEK F+RTIT Q  A+VGISL+EI
Sbjct: 720  NFGQYPYAGYLPNRPSVSRRPMPEPGTKEYDELARDPEKVFVRTITKQMQAIVGISLLEI 779

Query: 369  LSKHSSDEVYLXQHDTPAWTSDAKALEAF 455
            LSKHSSDEVYL Q DTP WTSDAKALEAF
Sbjct: 780  LSKHSSDEVYLGQRDTPEWTSDAKALEAF 808