miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|25348161|gb|BU135200.1|BU135200 CTGTTGTGGTGTGCAAAACTTTGTACCTTGCTTTTTGCCACACTGCAACACTTTACAGATGTGGAAGATGTGAAATTTGT
CATCAATTATGACTACCCTAACTCCTCTGAGGACTATATCCACCGAATTGGACGAACTGCCCGCAGTACCAAAACAGGCA
CAGCATATACATTCTTTACTCCTAACAATATTAAGCAAGTAAATGACCTCATCTCTGTGCTTCGGGAGGCTAATCAAGCC
ATCAACCCTAAATTGCTTCAGTTGATTGAAGACAGAGGTTCAGGTCGTTCCCGAGGTGACCGACGTGACAGATACTCTGC
GGGCAAAAGGGGTGGATTTAGTAGCTTTAGAGAGAGGGAGAACTTTGAGAGAACTTATGGTGCACTAGGAAAGAGAGACT
TTGGAGCCAAAGCTCAAAATGGGGCCTACAGTACCCAGAGTTTCAGTAATGGAACTCCTTTTGGAAATGGCTTTGCAGCT
GCAGGCATGCAAGCTGGCTTCAGGGCTGGTAACCCTGCAGGAGCTTACCAGAATGGTTATGATCAGCAGTATGGAAGTAA
CATTGCAAATATGCACAATGGCATGAACCAACAGCAGTATGCATATCCTGCCACTGGTGCTGCTCCTATGATAGGTTACC
CAATGCCAGCGAGTTATTCTCAATAACTTAGTGTATTTAAATGTCTCAGTTTTTCATAATTGCTCTTTATATCGTGTGTT
ATCTCAGAACAGGATAGTCATTTACAGAAATGGGAAACGCAGAAATGACTGCAAGTTGCCAGCAGTAATTATGGTGCACT
TTTCCGCTATTAAGTTGAATATTTCTCTACATTCCTGAAACATTTTAGCTTTTGTACTAGAAAATGCGACAGTGTTTTCA
AAAGTAAATGTCCGTGACTTTGAACTC




Most similar to sp|Q5R4I9|DDX5_PONAB

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5
            OS=Pongo abelii GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  306 bits (785), Expect = 1e-82
 Identities = 153/210 (72%), Positives = 169/210 (80%), Gaps = 8/210 (3%)
 Frame = +1

Query: 58   DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQ 237
            DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV+DLISVLREANQ
Sbjct: 406  DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 238  AINPKLLQLIE------XXXXXXXXXXXXXXYSAGKRGGFSSFRERENFERTYGALGKRD 399
            AINPKLLQL+E                    YSAGKRGGF++FR+REN++R Y +L KRD
Sbjct: 466  AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 400  FGAKAQNGAYSTQSFSNGTPFGNGFAAAGMQAGFRAGNPAGAYQNGYD--QQYGSNIANM 573
            FGAK QNGAYS  +++NG+ FG+ F +AG+Q  FR GNP G YQNGYD  QQYGSN+ NM
Sbjct: 526  FGAKTQNGAYSAANYTNGS-FGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNM 584

Query: 574  HNGMNQQQYAYPATGAAPMIGYPMPASYSQ 663
            HNGMNQQ YAYPAT AAPMIGYPMP  YSQ
Sbjct: 585  HNGMNQQAYAYPATAAAPMIGYPMPTGYSQ 614